Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03361 ATGAGCAGCAATGAGATCGGCCAGAAGCCTCCGCCGTCGATACTCGTTGCCCGATTCAAGGCCTTGCTCAAGCAACGCGACGATGACCCGAGGTTAAGGGCTTCGCTTCCCAGCACCGATGAAATTGTTCAGATTTATGAGTTGTTGTTGTCCGAACTCACCTGCAATGTTAAGCCCATCATCACCGATCTTACAATCATTGCCGAGCAGCAGAGGGAACATTCCAAGGGCATCGCTGAAGCTATTTGCGCTCGGATTCTTGAGGTGCCTGCAGATCAAAAGCTTCCTTCACTCTATCTTTTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTAGATACTTCTCTTTACGCCTACCTGAAGTAGTTCTATTGTCTCCCAAGGTTTTCTGTGAGGCATACAGACAGGTTCAACCGAATTTGCATTCTGCTATGCGACATCTCTTCGGTACCTGGTCAAAAGTCTTCCCTCCCTCTGTCCTACGCAAGATTGAAGCTCAATTGCAATTTTCTCAAGCAGTTAATAATCAACCATCCAGTGTTAATCCTCTCAGAAACTCTGAAACTCCTCGACCAACGCATGGGATACATGTTAATCCAAAATACGTAAGACAGATGGAATCCTCTACTTCAATTATGGATAGTGTTGGAGGTGAAAGGTTGGACTCAACAGGAACTGTAGGTAATACAAGTTTTGGCCTCGTACCTAGTAAGATCCATCCATTTATGCCTAGTAGGCTTGGAAGGTCCTCCTCACCTTCAAGAATTGGACTTGATAGGCCATTGTCCACATATATGGATGAATATGCAGCTGACAATTCTGCTGGCAGGACAGTTGAGAGAGAATCTCCTCATCCCCCAGTTGATTATGGAGTAGCTAAAGTGTTAGGTAGAGAAGAAGAGTTGGGTGAGTGGCAGCGAAAGCAGTTTTCTGGTGATATTCGGAAGAGGTTTCAAACTTCTATGACACACAGTCTTAGTAATGGACAACAGCGTCAAAGTCCGAGGGCTCTAATTGATGCATATGGCAGTGACAAAAGCCAAGAAACTTCTAGCAGTAAACCTTTGTTAGTTAAACGGCTGGATAGAAATGGTATAGACAAGGTTGTGACAACATCATGGCAGAATACTGAAGAGGAGGAATTTGATTGGGAAGATATGAGTCCGACATTAGTAGATCATAGTAGAAATAATGGTTTCCTGCAATCAACTATTGGTTTCACCACGGAAAAACCTGTTATTATTGCTGCTAATGCAACTTCTTCAGAACAGGATACCAGGAAGGGTTGGTCTAGTGGGTCTCAGCTTCCTCCAGTGGATGATTCCTCTGTTATAGCAGAAGATGCATTTGCCTCTTCAGCTGTATGTTTCCTCAACTTCTCTCTTTTATCTTTCTAA 1401 0.439 MSSNEIGQKPPPSILVARFKALLKQRDDDPRLRASLPSTDEIVQIYELLLSELTCNVKPIITDLTIIAEQQREHSKGIAEAICARILEVPADQKLPSLYLLDSIVKNVGQEYVRYFSLRLPEVVLLSPKVFCEAYRQVQPNLHSAMRHLFGTWSKVFPPSVLRKIEAQLQFSQAVNNQPSSVNPLRNSETPRPTHGIHVNPKYVRQMESSTSIMDSVGGERLDSTGTVGNTSFGLVPSKIHPFMPSRLGRSSSPSRIGLDRPLSTYMDEYAADNSAGRTVERESPHPPVDYGVAKVLGREEELGEWQRKQFSGDIRKRFQTSMTHSLSNGQQRQSPRALIDAYGSDKSQETSSSKPLLVKRLDRNGIDKVVTTSWQNTEEEEFDWEDMSPTLVDHSRNNGFLQSTIGFTTEKPVIIAANATSSEQDTRKGWSSGSQLPPVDDSSVIAEDAFASSAVCFLNFSLLSF. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03361 466 ProSiteProfiles CID domain profile. 38 173 IPR006569 -
Seca9g03361 466 FunFam polyadenylation and cleavage factor homolog 4 35 170 - -
Seca9g03361 466 Pfam CID domain 56 164 IPR006569 -
Seca9g03361 466 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 30 444 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Seca9g03361 466 Gene3D - 33 171 IPR008942 -
Seca9g03361 466 SUPERFAMILY ENTH/VHS domain 37 170 IPR008942 -
Seca9g03361 466 SMART 558neu5 41 170 IPR006569 -
Seca9g03361 466 MobiDBLite consensus disorder prediction 176 198 - -
Seca9g03361 466 CDD CID_Pcf11 46 170 IPR047415 -
Seca9g03361 466 MobiDBLite consensus disorder prediction 176 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03361 Seca-Chr9 47331464 47334971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03361 15 406 C2H2 Transcription Factor Family AT4G04885 47.848 1.02e-101 320