Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03356 ATGGGTATGATGCTACAAACCATTGTCACTGTGGTTCTTCTCCTTATGCTTCTTCTCATCATCATCTTCCTCTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTTTCTTGGCACTTCCGCTCTTCTATCAAGGGTGATTTAGAGAGGCCCCTCGTTGCCGATGAAGACGATGCAGACGTGTCATTTAATCAGAGCAATGAATTGCCTAGAGATTATGATCTTGAAGGTGCCTGTTATCCCAATGAAGCTCATTATCGATCACCTCGAACCCATGGCCAAGGACTTGTTCATAAGCAAAGGCTTCAGTCTCAGGCCCAGGCCCTTTCTGTTTCATCTAATTTGCCCCAAGGTGGTGATACTTTGATTGTAGATGTAATCTCTGATCCTTCTGAAGACGTTGATGTTGGTCAAACACTTAAGCTCTCTCCAGCTCATTTAGCTCACATTCAAAAGCATACCACTCCTAATTTTCAAAATGATAGACTGCAAGACTTTGTGCAAAGAGATATATCTGATCAAAGAAGTTGCCTCACTCTGGAGGTTATCAGTGGTCCTTCTCGTGGACTTCATTGTTCTGTACAATCAACAAATCCCTCTCGTCTGCCACTAACCTTGGGAAGAGTTTCCCCAAGTGATTTATTGATAAAGGATTCAGAAGTGTCAGGAAAGCATGCGTTGATAAAGTGGAATTTGGATAAGATGAAATGGGAGTTGGTGGATATGGGTAGCCTAAATGGAACACTTTTGAATTCTAAGCCAATCAATCATCCAGACACTGAAAGTAGGCATTGGGGAGATCCAATGAATCTTGCTAATGGAGATATTATAACACTTGGAACAACATCAAAAGTAATTGTTCACATTACTTCGCAAAATCAGCATCACATTCCCTTTGGAGTTGGTATGGCATCTGATCCCATGGCTTTGCGTCTAGGAGGAAAAAAGCTTCCCATGGAAGATGTTTGCTATTATCAATGGCCTCTACCTGGGCTCGATCAGTTTGGAATTTTTGGCATTTGTGATGGGCATGGTGGAGATAAGGCTGCCAAATCTGCTAGCAAGTTAGTATTTTCTGCCTTAGGTTGGCCATGA 1092 0.4222 MGMMLQTIVTVVLLLMLLLIIIFLFFLFKPWRFFFSWHFRSSIKGDLERPLVADEDDADVSFNQSNELPRDYDLEGACYPNEAHYRSPRTHGQGLVHKQRLQSQAQALSVSSNLPQGGDTLIVDVISDPSEDVDVGQTLKLSPAHLAHIQKHTTPNFQNDRLQDFVQRDISDQRSCLTLEVISGPSRGLHCSVQSTNPSRLPLTLGRVSPSDLLIKDSEVSGKHALIKWNLDKMKWELVDMGSLNGTLLNSKPINHPDTESRHWGDPMNLANGDIITLGTTSKVIVHITSQNQHHIPFGVGMASDPMALRLGGKKLPMEDVCYYQWPLPGLDQFGIFGICDGHGGDKAAKSASKLVFSALGWP. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03356 363 CDD FHA_PP2C70-like 177 287 - -
Seca9g03356 363 SUPERFAMILY SMAD/FHA domain 175 286 IPR008984 GO:0005515
Seca9g03356 363 PANTHER ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1 202 289 - -
Seca9g03356 363 Gene3D - 308 361 IPR036457 -
Seca9g03356 363 SUPERFAMILY PP2C-like 312 360 IPR036457 -
Seca9g03356 363 Gene3D - 171 307 - -
Seca9g03356 363 ProSiteProfiles Forkhead-associated (FHA) domain profile. 203 254 IPR000253 GO:0005515
Seca9g03356 363 SMART FHA_2 202 254 IPR000253 GO:0005515
Seca9g03356 363 Pfam FHA domain 204 279 IPR000253 GO:0005515
Seca9g03356 363 ProSitePatterns PPM-type phosphatase domain signature. 336 344 IPR000222 GO:0043169
Seca9g03356 363 FunFam Protein phosphatase 2C 70 172 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03356 Seca-Chr9 47241390 47243742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03356 1 361 PP2C-type Phosphatase Gene Family AT5G19280 51.323 4.42e-116 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03356 K01090 - gmx:100170642 535.028