Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03354 ATGAAGGAAGAATTGTCAGGGGAGGGGAAATTTAATGTTCTGTTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCATTGGCGTTACTTGATTGTGGATGAAGGGCATCGATTGAAGAATCACGAGTGTGCTCTAGCAAGAACCCTGGACTCTGGCTATCACATTCAACGAAGACTTCTGTTGACCGGTACCCCAATTCAGAATAGTTTGCAGGAGTTGTGGTCGCTGCTTAATTTTCTCCTTCCCAACATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGTTACTGATCATTCGGCGTCTTCATCAAGTAATAAGACCCTTCATATTAAGAAGGAAAAAGGATGAGGTAGAAAAATATCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCTGCCTGGCAGAAAGTATATTATCACCAAGTCACTGACGTGGGCAGAGTTGGCTTGGACAATGGTTCTGGAAAATCAAAAAGTCTACAAAACTTGACAATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAAACGTAAGGAGGAGATTGTTAGAGCATCAGGGAAATTTGAACTTCTTGACCGTTTGCTTCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTTTCACAAATGACTCGTCTCATGGACATTCTTGAAATTTATCTGCGACTTCATGATTTTAAATTTCTTAGACTTGATGGCTCTACAAAAACTGAGGAAAGAGGTTCCCTACTACGGAAATTCAATGCTCCTGACTCTCCATACTTTATGTTTCTCTTGAGCACTCGTGCTGGAGGTCTTGGTTTAAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGACAAAAGAAAGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCTAAACAGAAGATGGGGATTGATGCCAAAGTCATTCAGGCAGGGCTTTTCAATACTACTTCAACAGCCCAGGACAGAAGAGAGATGCTGGAGGAGATTATGCGTAGAGGTACTAGCTCACTCGGGACAGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGGAGGCTGAAGGAGAATTACAGATCTCGTCTCATGGAAGAGCATGAGTTACCAGATTGGGTATACTCTGCACTAAATAAGGATGATAAGGTCAAGTTTTTTGACAGTGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACGTTGAGTGATCTACAATGGATGAAGGCTGTGGAGAACGGACATGATATATCTAAGCTTTCAGTTAAAGGGAAAAGAAGATACCACCTCCCTGTTGACAGCCATGCACAAGCCAGTGATGACTTGGGGGCAGAAGAAAGGTTATTAGAATTAAGGAATGAAAGTGTTCCCATGGCCAATGAGAGATCAAGTGAAGACACATTCAATGTCACCCCTGCCTCTAAGAGGCTCAAGCATGAACAAATAAATACCCAGAAACATGAAAACGGGGATGTCAAAGTAAGTGGTTTGAACGAGCATATGTTTTCCTGGAATACTCACAGAAAGAAGAGATCAAACTATCTTGGACAGGGTTCATTATCTGATACTAGAGGGCAGAATGCAAATGGAAAAGCAAACTGGAACTGA 1851 0.4133 MKEELSGEGKFNVLLTHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYHQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRLKENYRSRLMEEHELPDWVYSALNKDDKVKFFDSGSVTGKRKRKEVVYADTLSDLQWMKAVENGHDISKLSVKGKRRYHLPVDSHAQASDDLGAEERLLELRNESVPMANERSSEDTFNVTPASKRLKHEQINTQKHENGDVKVSGLNEHMFSWNTHRKKRSNYLGQGSLSDTRGQNANGKANWN. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03354 616 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 89 IPR014001 -
Seca9g03354 616 Pfam SNF2-related domain 9 202 IPR000330 GO:0005524|GO:0140658
Seca9g03354 616 PANTHER SNF2/RAD54 HELICASE FAMILY 2 545 - -
Seca9g03354 616 SMART SnAC_2 428 489 IPR029295 GO:0042393
Seca9g03354 616 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 225 392 IPR001650 -
Seca9g03354 616 Pfam Snf2-ATP coupling, chromatin remodelling complex 430 489 IPR029295 GO:0042393
Seca9g03354 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 389 IPR027417 -
Seca9g03354 616 CDD SF2_C_SNF 211 346 - -
Seca9g03354 616 MobiDBLite consensus disorder prediction 590 616 - -
Seca9g03354 616 Gene3D - 1 135 IPR038718 -
Seca9g03354 616 SMART helicmild6 251 335 IPR001650 -
Seca9g03354 616 FunFam Probable ATP-dependent DNA helicase CHR12 142 441 - -
Seca9g03354 616 Gene3D - 142 440 IPR027417 -
Seca9g03354 616 Pfam Helicase conserved C-terminal domain 222 335 IPR001650 -
Seca9g03354 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 136 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03354 Seca-Chr9 47228234 47235338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03354 220 363 RAD5 or RAD16-like Gene Family AT5G22750 38.356 1.43e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca9g03354 SNF2_N 6.6e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03354 - - gmx:100775993 1128.62