Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03345 ATGTTTGCAAATTGCAACTTCAAATCTGGAAACTTCATAACAACGACACGCAGTTTTTGGGGTTCTGTTCTAGGTTTTGGTTCCGATCGACCGACGATGCTAGCGAATCATCTCCAAAACGGCATCGAAACGGCAAGGCTCGTTTGGTCGCGGATTCCCAACTCGGAAGAATCACAGTTCCTCGACGACGGCGTTGGCCTCCACAAAAAGAACGATGGAAGCGGCGTTGAGAGCCTTGACTATGAAGTCATTGAGAATTTTGCTTATCGTGAAGAACAGGCGCAGCGGGGGAAGCTGTATGTGAGTTATTTGCTGGTGGTCAAATGGTTCTTTGCCTTGCTCATTGGCATTTGTACCGGACTTGCTGCTGTTTTCATCAATATTTCTGTTGAAAATTTTGCTGGCTGGAAGTTCTCTGTGACATTTAATATAATTCAGAAATCATATGTTGCTGGCTTTGTCGTATATATCCTGATCAACTTGGTTTTGGTATATTCCTCTGTATATATTGTCACACAATTTGCACCAGCAGCTGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAATGGAGTTGATATTCATGGCATCCTTCTTTTCAGAACTTTGATCGGAAAGATACTTGGAAGCATTGGTTCAGTGGGAGGAGGCCTTGCTTTGGGTAAAGAAGGTCCTCTTGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGAGGATCCACTAAGTATCATCTAAATTCAAGGTGGATTAATGTATTTAAAAGTGACCGGGATCGCCGTGATCTTGTGACCTGTGGGTGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCAGTCGGTGGTGTTTTGTTTGCATTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTCATGTGGCGTGTCTTCTTCACTTCTGCTATTGTGGCTGTTGTGGTACGAACTGCAATGGGGTGGTGTAAGAGTGGAAAATGTGGACATTTTGGGTTTTGTTTTCATCCTTTCTCCTTCTTGACTGGTTTTGTTTTTAGTGGTCAAGAGGATTACTCATTTGCAGAGCTATTGCCAATGGCTATTATTGGGGTTGTTGGAGGCCTACTAGGAGCTTTATTTAACCAACTTACACTTTATATTACTACTTGGCGTCGAAATCATCTTCACAAGAAAGGGAACCGAGTCAAGATTATTGAAGCGTGCCTTGTCTCCCTTTTAACATCAGCCATTTCATTTGGCTTGCCACTTCTAAGAAAATGCAGTCCATGCCCTGAATCTGATCCTGCCTCTGGTATTGAATGTCCACGTCCTCCTGGAATGTATGGGAATTATGTAAATGTAAGACCGTTGGTTTTATGTTGTCTCTTTAGTTTCTTTTGTAGCAAAGACAATGAATACAATGATCTTGCAACTATTTTCTTCAATACACAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAGTAAATGAATACAGCTCCCAAAGTCTATTAACCTTTTTGGTTATGTTTTATGCTTTAGCAGTTGTGACGTTTGGTACTGCCGTGCCAGCTGGTCAATTTGTTCCTGGTATAATGATAGGATCAACATATGGACGTCTTGTTGGCATGCTTGTTGTAAAACATTACAGAAAACTCAACATTGAAGAGGGAACGTATGCTTTGCTAGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTATGTGTCATTATGGTTGAAATCACAAATAACTTGAAACTTTTACCCCTTATTATGCTTGTCCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAATGAGGGCATCTATGACGAGCAGGCTCGATTGAGGGGCATTCCATTACTGGAATCAAGGCCTAAATATGAGATGAGAAATATGACAGCAAAGGAGGCCTGTGGGAGTGGAAGGGTGAATAAATTTTAA 1941 0.4199 MFANCNFKSGNFITTTRSFWGSVLGFGSDRPTMLANHLQNGIETARLVWSRIPNSEESQFLDDGVGLHKKNDGSGVESLDYEVIENFAYREEQAQRGKLYVSYLLVVKWFFALLIGICTGLAAVFINISVENFAGWKFSVTFNIIQKSYVAGFVVYILINLVLVYSSVYIVTQFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKILGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWINVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGFCFHPFSFLTGFVFSGQEDYSFAELLPMAIIGVVGGLLGALFNQLTLYITTWRRNHLHKKGNRVKIIEACLVSLLTSAISFGLPLLRKCSPCPESDPASGIECPRPPGMYGNYVNVRPLVLCCLFSFFCSKDNEYNDLATIFFNTQDDAIRNLFSAKTVNEYSSQSLLTFLVMFYALAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMLVVKHYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGIYDEQARLRGIPLLESRPKYEMRNMTAKEACGSGRVNKF. 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03345 646 Pfam Voltage gated chloride channel 166 601 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g03345 646 CDD ClC_6_like 77 621 - -
Seca9g03345 646 PRINTS Plant CLC chloride channel signature 82 90 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca9g03345 646 PRINTS Plant CLC chloride channel signature 306 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca9g03345 646 PRINTS Plant CLC chloride channel signature 292 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca9g03345 646 PRINTS Plant CLC chloride channel signature 324 331 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca9g03345 646 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 62 640 - -
Seca9g03345 646 Gene3D Clc chloride channel 101 622 - -
Seca9g03345 646 PRINTS Chloride channel signature 552 568 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g03345 646 PRINTS Chloride channel signature 517 537 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g03345 646 PRINTS Chloride channel signature 176 193 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g03345 646 PRINTS Chloride channel signature 570 589 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g03345 646 PRINTS Chloride channel signature 608 622 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g03345 646 PRINTS Chloride channel signature 207 226 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g03345 646 PRINTS Chloride channel signature 271 290 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g03345 646 FunFam Chloride channel ClC3 100 421 - -
Seca9g03345 646 SUPERFAMILY Clc chloride channel 86 623 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03345 Seca-Chr9 47153905 47161048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03345 33 643 Ion Channels AT5G26240 82.190 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03345 K05016 - gmx:100811908 1053.89