Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03339 ATGTTTCTGTTCCTTCTATGCTCCTCCCATGTTCTAGGGAAGGCTAACTCAATTGAACTGGGTTCCAGCATTGTGGCTGGCACTAACTCATCTTGGAAATCACCCTCTGGTGAATATGCCTTTGGGTTCTACCGCCTTGTTACTGGTCTCTATCTTGTTGGAATTTGGTTTGACAAGATTCCACAAAATACCCTAGTTTGGTCTGCAAACCGTGACAATCCTGTTGAAATTGGATCAACAGTCAATCTTACACTCAGTGGCCAACTTGTGCTCCAACATGTGAATGGGACTTCATCTCCAATCTACAACGGAACAGACACAACTTCTGTTGTGGTGCAGGATGATGGAAATTTTATCTTGAGAAATTCAGTTTCCAACATTATCTGGCAGAGCTTTGATTCACCCACAGATACTCTTCTATTAGGCCAAACTCTGGATATGAATCAGATGCTTTGCTCCAATGCCAACGGAACAGTAGACTACTCAACTGGGAAATACAAATTGGAGATCCAAAAACCTGGTGGCAGCATTCTCCTCACAGCTTCTCAGTTCCAGGATAATGCTTATTGGAATTGGTGGAGTGGACCTACCGGTCAAAAAGATGTGAGAATTATTTTTGAAAACACAACAGCTTTTCTTTACGCTGTCAATAGCACCCAAATTGTATATAATATGACAACTGAAGCTAGGAATCCAATCAAAGATTATTACTACCGTGTAGTGATTGATGACCAAGGAAACTTGCAGAAATGGATTTATCATAAAGAAAATGGAGTTCAGTGGACATCTATATGGAAGGCAGTAGCAGAACCCTGCAAAGTGACTACCATTTGTGGGGTATATAGCTTTTGCAATTCATCTGATTCTAGTACATTCAGTTGTGAATGCTTGCCTGGCTATGTACCTTTGGATCCAAGTGTTCCTTCCAAAGGGTGCTATCCTAATGTAGTGAGGGACTTGTGTGCAGCAAATTCATCTGCATCAGACTTTACAGTGGAAGTGGAACCAGTTCAAGGTGTTGATATACCAAACGGAGAATATACTTATGCTGATCTACAGATCAAAAGTAATTCCGATTTGGAAAGCTGTAAGAGGGAACTGATGAATGATTGTTTCTCCATAGCTGCTGTTTTAGTTGACAACACTGCTTGTGTCAAGAAAAGAACGCCTATTATAAATGCCAGACCAAGCATCCTTGCCACTAAATATCGTGAAGCACTAACACTGATTAAAGTTCCTCGAGTCCACACACACAATGATAAGGATTCACCCTCTTGGATTGTTTTGCTAGTGGCTCTTATCTCATGCTCCCTACTTGCTGCTTTGTTTGCAGTTACTGCCACTTATCATCACCCCGTTTATGGATATCTGATACATAAACGGCCACCACCAAAGCCAAGAACCGTGGATGTGGATATCCATGTAAAAGCATTCTCATACCAACATCTGAGGGAAGCAACAAATGGATTCAAGGAAATACTTGGCCGAGGTTCCTTTGGTACTGTCTATAGTGCGTTTCTAGCCTTTGGAGGTGAACAGGTTGAGGTTGCTGTCAAACAACTGGAGCAGGTAGAACTGGAAGAACAAAGTGAGAAAGAATTTGTGAGAGAAGTTCAGGTGATTGCTCTGACTCATCATAGAAATCTTGTTAGGTTATTGGGCTTTTGCAATGAGCAGAATCATCGGCTTCTGGTTTATGAGAAAATGAAAAATGGGACACTGTTCAAGTTTCTTTTTGGAGAAGGGGGTGGTAAACCCAGTTGGGAATGTAGAGCCAGAATTGTTGTTGAAATTGCTAAAGGCTTATTGTATCTGCATGAAGAGTGTGACCACCAAATCATCCATTGTGACATAAAGCCACAGAATGTTCTTCTTGATTCAAACTATAGTGCAAAAATATCAGATTTTGGTCTAGCAAAGCTACTAATGAAAGATGGAACTCGATCAAGCACCCAGTCCCATGCTAGAGGGACAGTGGGATATATGGCACCAGAATGGCTCAAGAATGCACCTGTTACTACAAAGGTGGATATCTACAGCTTTGGTGTCATGTTGTTGGAAATAATATTTTGCAGGAGGCATATTGAGTTACAAAGAATAGCAGGTGATGACTTAATACTCATTGATTGGGTTCTATATTTGGCAAAGGAAAAGAATTTAAGAGCTGTTGTGACTCATGATGTTGAAGTTTCAAGTGATTTCGAGAGGTTTGAAAGAATGGCAATGGTTGGATTATGGTGTGTTCATCCAAACCCAGCTCTTAGACCTTCAATGAAGCAAGTGATGCAAATGCTAGAGGGAACCGTGGAAGTTGGGGTTCCACCTTTGCTTTATGATCAGATGATGGCTGATCAGAGCTTATAG 2364 0.4116 MFLFLLCSSHVLGKANSIELGSSIVAGTNSSWKSPSGEYAFGFYRLVTGLYLVGIWFDKIPQNTLVWSANRDNPVEIGSTVNLTLSGQLVLQHVNGTSSPIYNGTDTTSVVVQDDGNFILRNSVSNIIWQSFDSPTDTLLLGQTLDMNQMLCSNANGTVDYSTGKYKLEIQKPGGSILLTASQFQDNAYWNWWSGPTGQKDVRIIFENTTAFLYAVNSTQIVYNMTTEARNPIKDYYYRVVIDDQGNLQKWIYHKENGVQWTSIWKAVAEPCKVTTICGVYSFCNSSDSSTFSCECLPGYVPLDPSVPSKGCYPNVVRDLCAANSSASDFTVEVEPVQGVDIPNGEYTYADLQIKSNSDLESCKRELMNDCFSIAAVLVDNTACVKKRTPIINARPSILATKYREALTLIKVPRVHTHNDKDSPSWIVLLVALISCSLLAALFAVTATYHHPVYGYLIHKRPPPKPRTVDVDIHVKAFSYQHLREATNGFKEILGRGSFGTVYSAFLAFGGEQVEVAVKQLEQVELEEQSEKEFVREVQVIALTHHRNLVRLLGFCNEQNHRLLVYEKMKNGTLFKFLFGEGGGKPSWECRARIVVEIAKGLLYLHEECDHQIIHCDIKPQNVLLDSNYSAKISDFGLAKLLMKDGTRSSTQSHARGTVGYMAPEWLKNAPVTTKVDIYSFGVMLLEIIFCRRHIELQRIAGDDLILIDWVLYLAKEKNLRAVVTHDVEVSSDFERFERMAMVGLWCVHPNPALRPSMKQVMQMLEGTVEVGVPPLLYDQMMADQSL. 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03339 787 SMART blect_4 23 135 IPR001480 -
Seca9g03339 787 SUPERFAMILY Protein kinase-like (PK-like) 468 766 IPR011009 -
Seca9g03339 787 Pfam Protein kinase domain 491 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03339 787 ProSitePatterns Protein kinases ATP-binding region signature. 494 519 IPR017441 GO:0005524
Seca9g03339 787 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 27 775 - -
Seca9g03339 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 13 133 - -
Seca9g03339 787 SUPERFAMILY alpha-D-mannose-specific plant lectins 51 192 IPR036426 -
Seca9g03339 787 Gene3D - 10 133 IPR036426 -
Seca9g03339 787 CDD STKc_IRAK 494 767 - -
Seca9g03339 787 Gene3D - 135 279 - -
Seca9g03339 787 Gene3D Phosphorylase Kinase; domain 1 465 567 - -
Seca9g03339 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 569 773 - -
Seca9g03339 787 FunFam S-receptor-like serine/threonine-protein kinase 461 568 - -
Seca9g03339 787 CDD B_lectin 34 135 IPR001480 -
Seca9g03339 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Seca9g03339 787 Pfam D-mannose binding lectin 64 150 IPR001480 -
Seca9g03339 787 PIRSF SRK 1 786 IPR024171 GO:0004674
Seca9g03339 787 Gene3D Transferase(Phosphotransferase) domain 1 569 772 - -
Seca9g03339 787 Pfam S-locus glycoprotein domain 233 302 IPR000858 GO:0048544
Seca9g03339 787 SMART serkin_6 488 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03339 787 ProSiteProfiles Bulb-type lectin domain profile. 9 133 IPR001480 -
Seca9g03339 787 ProSiteProfiles Protein kinase domain profile. 488 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03339 Seca-Chr9 47118734 47124628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03339 474 767 Receptor kinase-like Gene Family AT1G60800 41.611 5.69e-68 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca9g03339 Pkinase 7.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03339 - - pvu:PHAVU_002G046100g 1012.68