Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03338 ATGGTTGAACCTGCATATACTGTGGCATCTGACAGTGAAACCACTGGAGAGGAAAAGTCATCTACTTTTCCTGATATAGCGATTGGAATTGATATTGGCACATCACAATGCAGTGTTGCTGTGTGGAATGGTTCCCAAGTGGAGCTTCTGAGGAACACGAGAAATCAGAAGATTATGAGATCATATGTAACTTTCAAAGATGACATCCCTTCTGGTGGAGTCAGTAGTCAACTCTCCCATGAGCATGAGATGCTGTCTGGAGCCACAATTTTCAACATGAAACGCTTGATTGGCAGAGTTGATACTGACCCAGTTGTCCATGCAAGTAAAAATCTTCCATTTCTGGTGCAGACCTTGGACATTGGCGTTCGCCCATTTATTGCTGCATTAGTGAACAATATGTGGAGATCCACTACCCCAGAAGAAGTCCTGGCAATATTTCTGGTGGAGTTGAGAGTAATGGCTGAAACTCAGCTGAAACGACCCATAAGAAATGTAGTTCTTACAGTTCCAGTTTCATTCAGTCGATTTCAGCTAACCCGGATAGAGCGAGCTTGTGCAATGGCTGGCCTTCATGTTCTTAGGTTGATGCCTGAACCAACAGCAGTGGCTTTGTTATACGGACAACAACAACAACAAGCTTCTCATGAGAATATGGGCAGTGGAAGTGAGAAAATTGCCCTCATTTTCAATATGGGTGCTGGTTATTGTGATGTTGCTGTGACTGCCTCCGCAGGAGGAGTATCACAGATAAAATCCTTGGCAGGAAGTACCATTGGTGGAGAAGACTTGCTTCAGAATATGATGCGTCATCTCTTACCAGATTCTGAAACTATATTCAAAAACCATGGGGTCAAAGAAATCAAATCAATGGGCTTGCTTCGAGTTGCAACCCAGGATGCAATTCACTGGCTTTCCTCTCAGACCAGTGTTCAGGTTGATGTAGACTTGGGAGATGGGTTGAAGATATGCAAGGTTGTTGACAGGGAGGAGTTTGAGGAGGTAAACAGAAAGGTGTTTGAGAAGTGTGAAAGCCTTATCATCCAGTGCTTGCAAGATGCAAAGATAGAAGTTGAGGATGTAAATGATGTGATAATTGTAGGTGGATGTTCTTATATCCCAAAGGTGAAGAATCTTGTTGCCAACATATGTAAGGGAAAGGAACTTTATAAAGGTATGAATCCTTTGGAAGCTGCTGTTTGTGGTGCAGCAGTAGAAGGAGCTGTTGCTTCAGGCATTAATGATCCCTTTGGAAACTTGGACTTATTAACTATTCAAGCCACACCTCTTGCCATTGGAATTCGAGCGGATGGGAACAGCTTTGTCCCTGTCATTCCGAGGAACACCACAATGCCAGCACGGAAGGAGCTAGTTTTCACAACTGTTCATGACAATCAAACTGAAGCATTGATTCTTGTCTATGAAGGTGAGGGCAATAAAGCAGAAGAAAACCACTTGTTGGGATATTTCAAGATAATGGGAATACCTGCAGCACCGAAAGGAGTTCCAGAAATCAATGTGTGCATGGACATTGATGCTGCAAACGTGCTTAGAGTTTTAGCTGGTGTTGTGATGCCTGGATCTCGCCAACCTGCAATTCCTGTTATGGAAGTGAGGATGCCAATGGTGGATGATGGCCATGGTTGGTGTGCTGAGGCCCTAAACACAACCTATGGTGCCACACTGGATTTGGTTACTCTCCACAAGAAGGCATAA 1716 0.4388 MVEPAYTVASDSETTGEEKSSTFPDIAIGIDIGTSQCSVAVWNGSQVELLRNTRNQKIMRSYVTFKDDIPSGGVSSQLSHEHEMLSGATIFNMKRLIGRVDTDPVVHASKNLPFLVQTLDIGVRPFIAALVNNMWRSTTPEEVLAIFLVELRVMAETQLKRPIRNVVLTVPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYGQQQQQASHENMGSGSEKIALIFNMGAGYCDVAVTASAGGVSQIKSLAGSTIGGEDLLQNMMRHLLPDSETIFKNHGVKEIKSMGLLRVATQDAIHWLSSQTSVQVDVDLGDGLKICKVVDREEFEEVNRKVFEKCESLIIQCLQDAKIEVEDVNDVIIVGGCSYIPKVKNLVANICKGKELYKGMNPLEAAVCGAAVEGAVASGINDPFGNLDLLTIQATPLAIGIRADGNSFVPVIPRNTTMPARKELVFTTVHDNQTEALILVYEGEGNKAEENHLLGYFKIMGIPAAPKGVPEINVCMDIDAANVLRVLAGVVMPGSRQPAIPVMEVRMPMVDDGHGWCAEALNTTYGATLDLVTLHKKA. 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03338 571 MobiDBLite consensus disorder prediction 1 20 - -
Seca9g03338 571 Gene3D - 91 146 - -
Seca9g03338 571 FunFam Heat shock 70 kDa protein 8 91 146 - -
Seca9g03338 571 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 418 533 IPR029047 -
Seca9g03338 571 SUPERFAMILY Actin-like ATPase domain 27 210 IPR043129 -
Seca9g03338 571 Pfam Hsp70 protein 27 522 IPR013126 GO:0005524|GO:0140662
Seca9g03338 571 Gene3D - 212 390 - -
Seca9g03338 571 Gene3D - 28 408 - -
Seca9g03338 571 FunFam Heat shock 70 kDa protein 8 261 342 - -
Seca9g03338 571 SUPERFAMILY Actin-like ATPase domain 224 409 IPR043129 -
Seca9g03338 571 PRINTS 70kDa heat shock protein signature 54 66 - -
Seca9g03338 571 PRINTS 70kDa heat shock protein signature 421 440 - -
Seca9g03338 571 PRINTS 70kDa heat shock protein signature 361 377 - -
Seca9g03338 571 PRINTS 70kDa heat shock protein signature 502 518 - -
Seca9g03338 571 PRINTS 70kDa heat shock protein signature 26 39 - -
Seca9g03338 571 PRINTS 70kDa heat shock protein signature 166 186 - -
Seca9g03338 571 PRINTS 70kDa heat shock protein signature 393 413 - -
Seca9g03338 571 PANTHER HEAT SHOCK PROTEIN 70KDA 27 521 IPR013126 GO:0005524|GO:0140662
Seca9g03338 571 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 423 529 IPR029047 -
Seca9g03338 571 FunFam Heat shock 70 kDa protein 8 416 531 - -
Seca9g03338 571 Gene3D Actin; Chain A, domain 4 261 342 - -
Seca9g03338 571 CDD HSP70_NBD 28 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03338 Seca-Chr9 47115038 47118225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03338 27 521 Calmodulin-binding Proteins AT3G12580 38.933 2.29e-106 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03338 K09489 - gmx:100809773 1046.57