Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03336 ATGGAACCGGGCATGAGATCAGGTGGCCCTTCTGGTTCTGGGGTTCTGGTAAAGAGCAGGAACTCGTCAGGTTGCTTAATTGTCAGAAAAAAAGGGGATGGGTTGTGTTCTACCGCTACTGCCGCTGCTGGGGTTGGTTCTTCCACCTCTCGGAAGATGTATGGATCCAAGAAAAGGCCCAACGTCAACATCTCCTTGAGTGATTCCGGATCAAGCGACGAGTTGCCGATGCCTCCTGCTAGAAGGCTCGGTCCTGAGACTATTCGAGTCTGTAATGGTTTGACTGCCTTTGAGCGGGGTATGGTAGGGGGGAGTGAAATTAATAGGAAAAGGGATAGACTGGAACAAATTAGGGGTAATGGGGAAGGTATGATTGCGGAGAGTGGCATGGACAAGGGGGAAAGGAAGCGCAATAAGCTGGGTGTGTTTGATTTCAATGAATATGAAAGGATGGATGTGGAGAAGATGAGAAGGAGGCATTTTGATAATAATGGAGTTGGTTTAGGAGGAGGCAGGTTTATGGGATCAGTACATATGGCTAGAAGTGGCATGGATAGGGAATTTGAAACAGGGTCAAGCAGGCACATTCTTGATAAGAGGAAGAACTTGTATCCTGACAGGCCGAGCGGCTTGTATCTAGGGGATAATGTTGATCATGGTAGGCTCAAGATGAACAGGGATGAAGATCAGTTGCCTCTACCCTTGTTGAGGGAGAAGTTTAATTCAGATAAACCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGGTGGGTGGGCCACTAGAACACTATGCTCATTGCAAACCCGTGGACAGCAGGCAAAGGTTGAAGACTGAAGGGACTGCCAAGGGGGATGTTCTGATTCATCCTGCATCGTACTTTGAACCAAAACCTGTTCAGAAACCAGGATTACTTGTTAGGCCAGAGAAGAAGCAGATAGCATCCAGAAAATCATTGTCAAGTAAGGATAGTAGGCGGGATGAGTGCGAGTCAGATAACAGTGACACATCGTTGAATCCAGGAATGAGAAATGTTGAAGCTCACAAACCTGCTAAGAGGATAATCTCTGAGGATGAACAGACTCCTGTGCATGAAAAGCTCCCACCTACAACATCAAAAGAAGGAAAAATCAAGCGTGGTAGTGGCACAGAAAAACAGAAACTGCGAGAAAGAATAAGGGAGATGCTCTTGAATGCAGGTTGGACCATAGACTACCGTCCTCGAAGGAATAGAGACTATCTGGATGCAGTTTACATTAATCCAGCAGGTACTGCCTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGAATGATGATGTTAATGAGGCCAAGCCCAAAGGGGATAGTTCTTCCTTCGCTCCTATCGCAGATGAAGTGCTCAGTCAGTTGACAAGAAAAACTAAGAAGAAAATGGAGAAAGAATTAAAGAAGAAAAAGAAGAAGAAAATATATGATAGTGAAAGTGATAGTGGAAAAGAGCCTCACATAAGAAAATCTGCCAGCAACAAGCATGATATGAATAGTGTGGATAGTGATAGCAATGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGATTGAAAATACCAATGCTAGTGCTAGCTCTAAAAGCCAGAATGCTACCCATCACTCAAATGATGGAATGGAAAAATCATTCTCTGGATGTGATCCTCATATTCTACATGGACGCCAGAGTAGAAAACATGGGAGATGTACCTTGTTAGTTCGTAGTTCTACCAACGGATTAAATTCAGAATCTGATAGCTTTGTCCCGTATACGGGCAAACGGACAGTGCTTTCCTGGTTGATTGACTCTGGGACAGTTGAGTTAAGCCAGAAGGTTCAATACCGTAGACGGAAGAAAGTACTGCTGGAGGGATGGATCACAAGAGACGGTATTCATTGTGGCTGCTGTAGTAAGATCCTTACAGTTTCAAAGTTTGAACTTCATGCAGGAAGCAAATTACCGCAGCCATATCAAAACATATTTTTGGAATCTGGAGTTTCTCTTTTACAGTGCCAGATAGATGCATGGAATAGACAAGAGAATTCTGGGAAAATTGGTTTCCATTCAGTTGATATTGACGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATAAAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGTACCTGTAAATTTTGTGGAATAGCCAGCGGAACTTCTAAAAAAGAAGTTGATGCAACTGTGTATGTCGTACGTACTTGCAACTTATGTGAGAAAAAATATCATTCCTCTTGTGCTAAGGAGATGGATGCCCTTCCTAATAACCTCAATACATCATCAGACCTTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTCGGTACCAAGCATGAACTAGAAGCGGGCTTTTCATGGTCTCTTATTCATAGAACAAATGAAGACTCAGAGGCAGCTAATAGGGGAATTACCCAGAGGGTGGAATGTAATTCCAAGCTGGCTATTGCACTGACTGTGATGGATGAATGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGATCAATATAATCCGTAATGTTTTATATAATAGTGGGTCAAACTTCAGTCGCTTGAATTATAGTGGATTTTACACTGCTATATTAGAGAAAGGGGATGAAATCATTTCTGCAGCATCTATCAGGTTCCATGGAACTAAGTTGGCAGAGATGCCATTCATTGGGACTCGCAACATATACAGGCGCCAAGGGATGTGCCGCCGACTTTTTTCTGCCATTGAATCGGTCCTTTGCTCTCTTAAGGTTGAAAAACTGGTTATTCCTGCAATTGCTGAACTCATGCATACATGGACAGCAGTTTTTGGGTTCACACATCTTGAGGAGTCACTCAGGCAAGAAATGAAGTCATTGAATTTGTTGGTCTTCCCTGGCATAGATATGTTACAGAAACTGTTTGTGGAACAAGGAAAACATGAGGGCAGTACAATTGCTGCAGGTTTGGAGAAACTGAAAAATGGGGGTAATGTTTTTATTAAGACCAAAATGGCAAATAGGTCAGATATGGATTCCTCAACTCTGCAAGATTCTCATGGAAGTGATGATGCTAGTTCAAATCCTACTAATGAGATGAATGATGAATGTAGTGATGCTTCTCAAGAACTTAACAACCAAGTTGTGGTTGACAGGACTGTGTGTTCCAAATCTTCTTCCGAGGAAAGGTTATCTGATTCTGTTTCAGATAAATTTTCTTCGCCTAGCACGAGTGATGGTGCACCAGAAATGAAAAATAAAATAGTGATGGCTCCTGTTGATAAATTAAATCCTTCTTCTTCCAATTGTCAGTCCGGTCCTCTGAATGGCACTTCTGTGAATTGTAATTCATCAGAGTTTGACATTAACCTAGTGTTGGATTCTCGAGTGGCCCACAATACTCTGCCTTCTAAAGAGGTTTACATGACTGATGCTCATGAGGTTCTTGAAACTGTTCCATCAGGGAAATTATCTGAAGAGAATATTACCAAGGAGAACAAGCAAAATGTAGATATCTCTGATTCTGTTTTCAATCATACTGATGAGAGTTTGTTGCAAGATAGATCAGTTTCCAATGATGAAATTGGATATGAGGGTGAGAAGAATTTACATTTGAACATAGGAGTTGCTTCAAATGAAATTAATTTTGATGAAAATGACGGAAATGCTTCCAGTGATAGTTCCAAGACTGATCTAACAGATTGA 3849 0.4167 MEPGMRSGGPSGSGVLVKSRNSSGCLIVRKKGDGLCSTATAAAGVGSSTSRKMYGSKKRPNVNISLSDSGSSDELPMPPARRLGPETIRVCNGLTAFERGMVGGSEINRKRDRLEQIRGNGEGMIAESGMDKGERKRNKLGVFDFNEYERMDVEKMRRRHFDNNGVGLGGGRFMGSVHMARSGMDREFETGSSRHILDKRKNLYPDRPSGLYLGDNVDHGRLKMNRDEDQLPLPLLREKFNSDKPIRVQGKNGVLKVMVNKKVGGPLEHYAHCKPVDSRQRLKTEGTAKGDVLIHPASYFEPKPVQKPGLLVRPEKKQIASRKSLSSKDSRRDECESDNSDTSLNPGMRNVEAHKPAKRIISEDEQTPVHEKLPPTTSKEGKIKRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDVNEAKPKGDSSSFAPIADEVLSQLTRKTKKKMEKELKKKKKKKIYDSESDSGKEPHIRKSASNKHDMNSVDSDSNEEKLSSFIKQGSKSMKNKMIENTNASASSKSQNATHHSNDGMEKSFSGCDPHILHGRQSRKHGRCTLLVRSSTNGLNSESDSFVPYTGKRTVLSWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIFLESGVSLLQCQIDAWNRQENSGKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKMLPPGEWHCPNCTCKFCGIASGTSKKEVDATVYVVRTCNLCEKKYHSSCAKEMDALPNNLNTSSDLSFCGKECKELFEHLKKYLGTKHELEAGFSWSLIHRTNEDSEAANRGITQRVECNSKLAIALTVMDECFLPVVDRRSGINIIRNVLYNSGSNFSRLNYSGFYTAILEKGDEIISAASIRFHGTKLAEMPFIGTRNIYRRQGMCRRLFSAIESVLCSLKVEKLVIPAIAELMHTWTAVFGFTHLEESLRQEMKSLNLLVFPGIDMLQKLFVEQGKHEGSTIAAGLEKLKNGGNVFIKTKMANRSDMDSSTLQDSHGSDDASSNPTNEMNDECSDASQELNNQVVVDRTVCSKSSSEERLSDSVSDKFSSPSTSDGAPEMKNKIVMAPVDKLNPSSSNCQSGPLNGTSVNCNSSEFDINLVLDSRVAHNTLPSKEVYMTDAHEVLETVPSGKLSEENITKENKQNVDISDSVFNHTDESLLQDRSVSNDEIGYEGEKNLHLNIGVASNEINFDENDGNASSDSSKTDLTD. 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03336 1282 CDD PHD2_CHD_II 722 761 - -
Seca9g03336 1282 Coils Coil 471 491 - -
Seca9g03336 1282 ProSitePatterns Zinc finger PHD-type signature. 722 761 IPR019786 -
Seca9g03336 1282 Pfam PHD-finger 722 764 IPR019787 -
Seca9g03336 1282 MobiDBLite consensus disorder prediction 477 539 - -
Seca9g03336 1282 PANTHER PHD FINGER PROTEIN 12 334 1135 IPR042163 GO:0003714|GO:0045892
Seca9g03336 1282 MobiDBLite consensus disorder prediction 46 72 - -
Seca9g03336 1282 MobiDBLite consensus disorder prediction 547 566 - -
Seca9g03336 1282 Pfam Tify domain binding domain 644 694 IPR032308 -
Seca9g03336 1282 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 913 997 IPR016181 -
Seca9g03336 1282 MobiDBLite consensus disorder prediction 1057 1091 - -
Seca9g03336 1282 MobiDBLite consensus disorder prediction 488 522 - -
Seca9g03336 1282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 711 812 IPR013083 -
Seca9g03336 1282 MobiDBLite consensus disorder prediction 523 539 - -
Seca9g03336 1282 SUPERFAMILY FYVE/PHD zinc finger 711 767 IPR011011 -
Seca9g03336 1282 MobiDBLite consensus disorder prediction 46 84 - -
Seca9g03336 1282 MobiDBLite consensus disorder prediction 316 339 - -
Seca9g03336 1282 MobiDBLite consensus disorder prediction 352 392 - -
Seca9g03336 1282 MobiDBLite consensus disorder prediction 1105 1131 - -
Seca9g03336 1282 ProSiteProfiles Zinc finger PHD-type profile. 719 764 IPR019787 -
Seca9g03336 1282 MobiDBLite consensus disorder prediction 1261 1282 - -
Seca9g03336 1282 SMART PHD_3 763 823 IPR001965 -
Seca9g03336 1282 SMART PHD_3 721 762 IPR001965 -
Seca9g03336 1282 MobiDBLite consensus disorder prediction 299 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03336 Seca-Chr9 47095907 47103455 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03336 1 1051 PHD Transcription Factor Family AT4G14920 49.485 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca9g03336 TDBD 5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03336 - - gmx:100814247 1799.64