Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03332 ATGGAACCGGGCATGAGATCAGGTGGCCCTTCTGGTTCTGGGGTTCTGGTAAAGAGCAGGAACTCGTCAGGTTGCTTAATTGTCAGAAAAAAAGGGGATGGGTTGTGTTCTACCGCTACTGCCGCTGCTGGGGTTGGTTCTTCCACCTCTCGGAAGATGTATGGATCCAAGAAAAGGCCCAACGTCAACATCTCCTTGAGTGATTCCGGATCAAGCGACGAGTTGCCGATGCCTCCTGCTAGAAGGCTCGGTCCTGAGACTATTCGAGTCTGTAATGGTTTGACTGCCTTTGAACGGGGTATGGTAGGGGGGAGTGAAATTAATAGGAAGAGGGATAGACTAGAACAAATTAGGGGTAATGGGGAAGGTATGATTGCGGAGAATGGCTTGGACAAGAGGGAAAAGAAGCGCAATAAGCTGGGTGTGTTTGATTTCAATGAATATGAGAGGATGGATGTGGAGAAGATGAGAAGGAGGCATTTTGATAATAATGGAGTTGGTTTAGGAGGAGGTAGGTTTATTGGATCAGTACATATGGCTAGAAGTGGCGTTGATAATGAATTTGAAACCGGGTCAAGCAGGCACATTCTTGATAAGAGGAAGAACTTGTATTATGACAGACCGAGCAGCTTGCATCCAGGGGATACTGTTGATCATGGTAGGCTCAAGATGAACAGGGATGGAGATCGGTTGCCTCTACCCTTGTTGAGGGAGAAGTTTAATTCAGATAAACCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGGGCCACTAGAACACTATGCTCATTGCAAACCCATGGACAGAAGGCAAAGGTTGAAGACTGAAGGGACTGCCAAGGGGAAAGCTCTGATTCATACTGCATCGTACTTTGAAGCAAAACCTGTTGAGAAACCAGGATTACTTGTTCGGCCAGAGAAGAAGCAGATAGCATCCAGAAAATCATTGTCAAGTAAGGATAGTAGGCGGGATGAGTGTGATTCAGATAACAGTGACACATCGTTGAATCCAGGAATGAGAAATGTTGAAGCTCACAAACCTGCTAAGAGGATAATCTCTGAGGATGAACAGACTCCTGTGCATGAAAAGTCCCCACCTACAACGTCGAAAGAAGGAAAACTCAAGCGTGGTAGTGGCACAGAAAAACAGAAACTGCGAGAAAGAATAAGGGAGATGCTCTTGAATGCAGGTTGGACCATAGACTACCGTCCTCGAAGGAATAGAGACTATCTGGATGCAGTTTACATTAATCCAGCAGGTACTGCCTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGAATGATGATGTTAAAGAGGCCAAGCCTAAAGTGGATAGTTCTTCCTTCGCTCCTATCGCAGATGAAGTGCTCAGTCAGTTGACAAGAAAAACTAAGAAGAAAATGGAGAAAGAATTAAAGAAGAAAAAGAAGAAAATATATGATAGTGAAAGTGATAGTGGAAAAGAGCCTCACATAAGAAGATCTGCCAGCAACAAGCATGAAATGAATAGTGTGGATAGTGATAGCAATAAGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGATTGGAAATACCAATGCTATTGCTAGCTCTAAAAGCCAGAATGCTACCCATCACTCAAATGATGGAATCGAAAAATCATTCTCTGGATGTGATCCTCATATTCTACATGGACGCCAGAGTAGAAAACATGGAAGATGTACCTTGTTAGTTCGTAGTTCTAACAAGGGATTAAATTCAGAATCTGATGGCTTTGTCCTGTATACAGGCAAACGGACAGTGCTTTCCTGGTTGATTGACTCTGGGATAGTTGAGTTAAGCCAGAAGGTTCAATACCGTAGACGGAAGAAAGTACTGCTTGAGGGATGGATCACAAGAGACGGTATTCATTGTGGATGCTGTAGTAAGATCCTTACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTACCGCAGCCATATCAAAACATATTTTTGGAATCTGGAGTTTCTCTTTTACAGTGCCAGATAGATGCTTGGAATAGACAAGAGAATTCTGGGAAAATTGGTTTTCATTCAGTTGATATTGACGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGTACCTGTAAATTTTGCGGAATATCCAGCGGAACTTCTAAAAAAGAAGTTGATGCAACTGTGTATGTCCTACGTACTTGCAGCTTATGTGAGAAAAAATATCATTCCTCTTGTGCTAAGGAGATGGATGCCCTTCCTAATAACTTCAATACACCAGACCTTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTTCGAGCACTTGAAGAAGTACCTTGGTACCAAGCATGAACTAGAAGCGGGCTTTTCATTTTCTCTTATTCACAGAACAAATGAAGACTCAGAGGCAGCTAGTAGGGGAATTACCCAGAGGGTGGAATGTAATTCCAAGCTGGCTATTGCACTGACTGTGATGGATGAATGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGATCAATATAATCCGTAATGTTTTATATAATAGTGGGTCAAACTTCAGTCGGTTGAATTATAGTGGATTTTACACTGCTATTTTAGAGAGAGGGGATGAAATCATTTCTGCAGCATCTATCAGGTTCCATGGAACTAAGTTGGCAGAGATGCCATTCATTGGGACTCGCAACATATACAGGCGCCAAGGGATGTGTCGGCGGCTTTTTTCTGCCATTGAATCGGTCCTTTGCACTCTGAAGGTTGAAAAACTGGTTATTCCTGCAATTGCTGAACTCATGCATACATGGACAGCAGTTTTTGGCTTCACACATCTTGAGGAGTCACTCAGGAAAGAAATGAAGTCATTGAATTTGTTGGTCTTCCCTGGCATAGATATGTTACAGAAGCTGTTTGTGGAGCAAGGAAAACATGAGGGCAGTGGAATTGCTGCAGGTTTGGAGAAACTGAAAAATGGGGATAATGTTTTTATTAAGAACAAATTGGCAAATAGTTCAGGTATGGATTCCTCAACTCTGCAAGATTCTCATGGAAGTGATGATGCTAGTTCAAATCCTGCCGATGAGATGAATGATGAATGTAGTGATGCTTCTCAAGAGCTTAACAACCAAGTTGTGGTTGACAGAACTATGTGTTCCAAATCTCGGTCGGAGGAAAGGTTATCTGATTCTGTTTCAGATAAATTTTCTTCTCCGAATACGAGTGATGGTGCACCAGGAATGAAAAATAGAATAGTGATGGCTCCTGTTGATAAATTAAATCCTTCGTCTTCCAAATGTCAATCCGTACCTCTGAATGGCACTTCTGTGAAATGTAATTCATCAGAGTTTGACATTAACCTAGTGCTGGATTCTCGAGTGGCCCACAATACTCTGCCTTCTAAAGAGGTTTACATGACTGATGCTCTTGAGGTTCTTGAAGCTGTTCCTTCAGGGAATTTATCTGAAGAGAATATTACCAAGGAGAACAAGCAAAATGTAGATATCTCCGATTCTGTTCTCAATCATGCTGATGAGCGTTTGTTGCAAGATAGATCAGATTCCAATGGTGAAATTGGATATCGGGGTGAGAAGAATTTACATTTGAACATAGGAGTTGCTTCAAATGAAATTAATTTTTATGAAAATGACGGAAATGCTTCCAGTGATAGTTCCAAGACTGATCTAACAGATTGA 3846 0.4168 MEPGMRSGGPSGSGVLVKSRNSSGCLIVRKKGDGLCSTATAAAGVGSSTSRKMYGSKKRPNVNISLSDSGSSDELPMPPARRLGPETIRVCNGLTAFERGMVGGSEINRKRDRLEQIRGNGEGMIAENGLDKREKKRNKLGVFDFNEYERMDVEKMRRRHFDNNGVGLGGGRFIGSVHMARSGVDNEFETGSSRHILDKRKNLYYDRPSSLHPGDTVDHGRLKMNRDGDRLPLPLLREKFNSDKPIRVQGKNGVLKVMVNKKKVGGPLEHYAHCKPMDRRQRLKTEGTAKGKALIHTASYFEAKPVEKPGLLVRPEKKQIASRKSLSSKDSRRDECDSDNSDTSLNPGMRNVEAHKPAKRIISEDEQTPVHEKSPPTTSKEGKLKRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDVKEAKPKVDSSSFAPIADEVLSQLTRKTKKKMEKELKKKKKKIYDSESDSGKEPHIRRSASNKHEMNSVDSDSNKEKLSSFIKQGSKSMKNKMIGNTNAIASSKSQNATHHSNDGIEKSFSGCDPHILHGRQSRKHGRCTLLVRSSNKGLNSESDGFVLYTGKRTVLSWLIDSGIVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIFLESGVSLLQCQIDAWNRQENSGKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGISSGTSKKEVDATVYVLRTCSLCEKKYHSSCAKEMDALPNNFNTPDLSFCGKECKELFEHLKKYLGTKHELEAGFSFSLIHRTNEDSEAASRGITQRVECNSKLAIALTVMDECFLPVVDRRSGINIIRNVLYNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRNIYRRQGMCRRLFSAIESVLCTLKVEKLVIPAIAELMHTWTAVFGFTHLEESLRKEMKSLNLLVFPGIDMLQKLFVEQGKHEGSGIAAGLEKLKNGDNVFIKNKLANSSGMDSSTLQDSHGSDDASSNPADEMNDECSDASQELNNQVVVDRTMCSKSRSEERLSDSVSDKFSSPNTSDGAPGMKNRIVMAPVDKLNPSSSKCQSVPLNGTSVKCNSSEFDINLVLDSRVAHNTLPSKEVYMTDALEVLEAVPSGNLSEENITKENKQNVDISDSVLNHADERLLQDRSDSNGEIGYRGEKNLHLNIGVASNEINFYENDGNASSDSSKTDLTD. 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03332 1281 CDD PHD2_CHD_II 722 761 - -
Seca9g03332 1281 MobiDBLite consensus disorder prediction 478 528 - -
Seca9g03332 1281 MobiDBLite consensus disorder prediction 1056 1132 - -
Seca9g03332 1281 ProSitePatterns Zinc finger PHD-type signature. 722 761 IPR019786 -
Seca9g03332 1281 Pfam Tify domain binding domain 644 694 IPR032308 -
Seca9g03332 1281 MobiDBLite consensus disorder prediction 46 72 - -
Seca9g03332 1281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 710 800 IPR013083 -
Seca9g03332 1281 MobiDBLite consensus disorder prediction 488 522 - -
Seca9g03332 1281 PANTHER PHD FINGER PROTEIN 12 339 1122 IPR042163 GO:0003714|GO:0045892
Seca9g03332 1281 SUPERFAMILY FYVE/PHD zinc finger 711 766 IPR011011 -
Seca9g03332 1281 MobiDBLite consensus disorder prediction 353 394 - -
Seca9g03332 1281 MobiDBLite consensus disorder prediction 312 340 - -
Seca9g03332 1281 Coils Coil 472 499 - -
Seca9g03332 1281 MobiDBLite consensus disorder prediction 46 84 - -
Seca9g03332 1281 MobiDBLite consensus disorder prediction 312 394 - -
Seca9g03332 1281 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 912 996 IPR016181 -
Seca9g03332 1281 MobiDBLite consensus disorder prediction 1056 1101 - -
Seca9g03332 1281 Pfam PHD-finger 722 764 IPR019787 -
Seca9g03332 1281 SMART PHD_3 763 822 IPR001965 -
Seca9g03332 1281 SMART PHD_3 721 762 IPR001965 -
Seca9g03332 1281 ProSiteProfiles Zinc finger PHD-type profile. 719 764 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03332 Seca-Chr9 47075932 47083789 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03332 1 1049 PHD Transcription Factor Family AT4G14920 50.094 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca9g03332 TDBD 5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03332 - - gmx:102666194 1775.76