Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03330 ATGGAACCGGGCATGAGATCAGGTGGCCCTTCTGGTTCTGGGGTTCTGGTAAAGAGCAGGAACTCGTCAGGTTCTTTAATTGTCAGAAAAAAAGGGGATGGGTTGGGTTCTCCAGCTACTGCCGCTGCTGGGGTTGGTTCTTCCACCTCTCGGAAGCTGTATGGATCCAAGAAAAGGCCCAACGTCAACATGTCCTTGAGTGATTCTGGATCAAGCGACGATTTGCCGATGCCTCCTGCTAGAAGGCTCCGTCCTGAGACTATTCGAGTCTGTAATGGTTTGACTGCCTCTGAGCGGGGTATGGTAGGGGGGAGTGAAATTAATAGGAAGAGGGATAGACTGGAACAAATTAGGGGTAATGGGGAAGGTATGAATGCGGAGAATGGCTTGGACAAGGGGGAAAGGAAGCGCAATAAGCTGGGTGTGTTTGATTTCAATGAATATGAGAGGATGGATGTGGAGAAGACGAGAAGGAGGCATTTTGATAATAATGGAGTTGGTTTAGGAGGAGGTAGGTTTATGGGATCAGTACATATGGCTAGAAGTGGCGTTGATAGGGAATTTGAAACCGGGTCAAGCAGGCATATTCTTGACAAGAGGAAGAACTTGTATCATGACAGGCCAAGCAGCTTGTATCCAGGGGTTAATGTTGATCACGGTAGGCTCAAGATGAACAGGGATGGAGATCGGTTACCTCTACCCTTGTCGAGGGGGAAATTTAATTCAGATAAACCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGAGCCATTAGAACACTATGATCATTGCAAACCTGTGGACAGCAGGCGAAGGTTGAAGACCAAAGGGATTGCCAAGGGGAATGCTCTGATTCATCCTGCATTGCACTTAGAAGCAAAACCTGTTCAGAAACCAGGATTACTTGTTAGGCCAGAGAAGAAGCAGACAGCATCCAGAAAATCATTGTCAAATAAGGATAGTAGGCGGGATGAGTGCGAGTCAGATAACAGTGACACATCGTTGAATCCAGGAATGAGAAATGTTAAAGGTCACAAACCTGCTAAGAGGATAATCTCTGAGGATGAACAGACTCCTGTGCATGAAAATTCCCCACCTACAACATCAAAAGAAGGAAAACTCAAGCGTGGTAGTGGCACAGAAAAACAGAAACTGCGAGAAAAAATAAGGGAGATGCTCTTGAATGCAGGTTGGACCATAGACTACCGTCCTCGAAGGAATAGAGACTATCTGGATGCAGTTTACATTAATCCAGCAGGTACTGCCTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAGTTGAATGATGATGTTAAGGAGGCCAAGCCCAAAGGGGATAGTTCTTCCTTCGCTCCTATCGCAGATGAAGTGCTCAGTCAGTTGACAAGAAAAACTAAGAAGAAAATGGAGAAAGAATTAATGAAGAAAAAGAAGAATAAAAGATATGATAGTGAAAGTGATAGTGGAAAAGAGCCTCACATAAGAAGATCTGCCAGCAACAAGCATGATATGAATAGCGTGGATAGTGATAGCAATGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGATTGAAAATACCAATGCTAGTGCTAGCTCTAAAAGCCAGAATGCTACCCATCACTCAAATGATGGAATGGAAAAATCATTCTCTGGATGTGATCCTCATACTCTACATGGACGCCAGAGTAAAAAACATGGAAGATGTACCTTGTTATATCGTAGTTCTAACAAGGGGTTAAATTCAGAGTCTGATGGCTTTGTCCCGTATACGGGCAAACGGACAGTGCTTTCCTGGTTGATTGACTCTGGGACAGTTGAGTTAAGCCAGAAGGTTCAATACCGTAGACGGAAGAAAGTACTGTTGGAGGGATGGATCACAAGACACGGTATTCATTGTGGCTGCTGTAGTAAGATCCTTACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTTCCACAGCCATATCAAAACATATTTTTGGAATCTGGAGTTTCTCTTTTACAGTGCCAGATAGATGCATGGAATAGACAAGAGAATTCTGGGAAAATTGGTTTCCATTCAGTTGATATTGATGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATATCATCAGAGCTGCTTGGATATACAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGTACCTGTAAATTTTGTGGAATAGCCAGTGGAACTTCTAAGAAAGAAGTTGATGCAACTACGAAGGTCTTATGTACTTGCAACTTATGTGAGAAAAAATATCATTCCTCTTGCGCTAAGGAGATGGATGCCCTTCCTAATGACTTAAATACATCGGACCTTTCTTTTTGTGGGGAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTTGGTACCAAGCATGAACTAGAAGCGGGCTTTTCATGGTCTCTTATTCACAGAACAAATGAAGACTCGGAGGCAGGTAGGGGAATTACCCAGAGGGTGGAATGTAATTCCAAGCTGGCTATTGCACTGACTGTGATGGATGAATGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGATCAATATAATCCGTAATGTTTTATATAATAGTGGGTCAAACTTCAGTCGGTTGAATTATAATGGATTTTACACTGCTATTTTAGAGAGAGGGGATGAAATCATTTCTGCAGCATCTATCAGGTTCCATGGAACTAAGTTGGCAGAGATGCCATTCATTGGGACTCGCAACATATACAGGCGCCAAGGGATGTGCCGCCGACTTTTTTCTGCCATTGAATCGGTCCTTTGCACTCTGAAGATTGAAAAACTGGTTATTCCTGCAATTGCTGAACTCATGCATACATGGACAGCAGTTTTTGGCTTCACACATCTTGAGGAGTCACTCAGGCAAGAAATGAAGTCATTGAATTTGTTGGTCTTCCCTGGCGTAGATATGTTACAGAAGCTATTTGTGGAGCAAGGAAAACATGAGGCCAGTGCAATTGCTTCAGGTTTGGAGAAACTGAAAAATAGGGATAATGTTTTTACTAAGACCAAATTGGCAAATAAGTCAGATATGGATTCCTCAACTCTGCAAGATTCTCATGGAAGTGATGATGCTAGTTCAAATCCTGCCAGTGAGATGAATGATGAATGTAGTGATGCTTCTCAAGAACTTAACAACCAAGTTACGGTTGACAGGACTATGTGTTCCAAATCTCGTCCGGAGGAAAGGTTATCTGATTCTGTTTCAGATAAATTTCCTTCCCCTAGTAGGAGTGATGGTGCACCAGAAATGAAAAATAAAATAGTAATGGCTCCTGTTGATAAATTAAATCCTTGTTCTTCCATATGTCAGTCTGTTCCTCTGAATGGCTCTTCTGTGAATTGTAATTCATCAGAGTTTGACATTAACCTAGTGTTGGATTCTCGAGTGCCCCACAATACTCTGCCTTCTGAAGAGGTTTACATGACTGATGCTCATGAGGTTCTTGAAGCTGTTCCTTCAGGGAATTTATCTGAAGAGAATATTACCAAGGAGAACAAGCAAAATGTAGATATCTCCGAATCTGTTCCTTCAGGGAATTTATTTGAAGAGAATATTACCAAGGAGAACAAGCAAAATGTAGATATCTCCGAATCTGTTCTCAATCATGCTGATGAGAGTTTGTTGCAAGATAGATCAGATTCCAATGGTGATATTGGATATGAGGGTGAGAAGAATTTACATTTGAACATAGGAGTTGCTTCAAATGAAATTTAA 3858 0.4189 MEPGMRSGGPSGSGVLVKSRNSSGSLIVRKKGDGLGSPATAAAGVGSSTSRKLYGSKKRPNVNMSLSDSGSSDDLPMPPARRLRPETIRVCNGLTASERGMVGGSEINRKRDRLEQIRGNGEGMNAENGLDKGERKRNKLGVFDFNEYERMDVEKTRRRHFDNNGVGLGGGRFMGSVHMARSGVDREFETGSSRHILDKRKNLYHDRPSSLYPGVNVDHGRLKMNRDGDRLPLPLSRGKFNSDKPIRVQGKNGVLKVMVNKKKVGEPLEHYDHCKPVDSRRRLKTKGIAKGNALIHPALHLEAKPVQKPGLLVRPEKKQTASRKSLSNKDSRRDECESDNSDTSLNPGMRNVKGHKPAKRIISEDEQTPVHENSPPTTSKEGKLKRGSGTEKQKLREKIREMLLNAGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDVKEAKPKGDSSSFAPIADEVLSQLTRKTKKKMEKELMKKKKNKRYDSESDSGKEPHIRRSASNKHDMNSVDSDSNEEKLSSFIKQGSKSMKNKMIENTNASASSKSQNATHHSNDGMEKSFSGCDPHTLHGRQSKKHGRCTLLYRSSNKGLNSESDGFVPYTGKRTVLSWLIDSGTVELSQKVQYRRRKKVLLEGWITRHGIHCGCCSKILTVSKFELHAGSKFPQPYQNIFLESGVSLLQCQIDAWNRQENSGKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTYHQSCLDIQMLPPGEWHCPNCTCKFCGIASGTSKKEVDATTKVLCTCNLCEKKYHSSCAKEMDALPNDLNTSDLSFCGEECKELFEHLKKYLGTKHELEAGFSWSLIHRTNEDSEAGRGITQRVECNSKLAIALTVMDECFLPVVDRRSGINIIRNVLYNSGSNFSRLNYNGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRNIYRRQGMCRRLFSAIESVLCTLKIEKLVIPAIAELMHTWTAVFGFTHLEESLRQEMKSLNLLVFPGVDMLQKLFVEQGKHEASAIASGLEKLKNRDNVFTKTKLANKSDMDSSTLQDSHGSDDASSNPASEMNDECSDASQELNNQVTVDRTMCSKSRPEERLSDSVSDKFPSPSRSDGAPEMKNKIVMAPVDKLNPCSSICQSVPLNGSSVNCNSSEFDINLVLDSRVPHNTLPSEEVYMTDAHEVLEAVPSGNLSEENITKENKQNVDISESVPSGNLFEENITKENKQNVDISESVLNHADESLLQDRSDSNGDIGYEGEKNLHLNIGVASNEI. 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03330 1285 PANTHER PHD FINGER PROTEIN 12 335 1110 IPR042163 GO:0003714|GO:0045892
Seca9g03330 1285 MobiDBLite consensus disorder prediction 306 393 - -
Seca9g03330 1285 MobiDBLite consensus disorder prediction 489 523 - -
Seca9g03330 1285 ProSiteProfiles Zinc finger PHD-type profile. 720 765 IPR019787 -
Seca9g03330 1285 Pfam PHD-finger 723 765 IPR019787 -
Seca9g03330 1285 MobiDBLite consensus disorder prediction 1051 1131 - -
Seca9g03330 1285 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 912 996 IPR016181 -
Seca9g03330 1285 MobiDBLite consensus disorder prediction 1051 1101 - -
Seca9g03330 1285 MobiDBLite consensus disorder prediction 474 568 - -
Seca9g03330 1285 Pfam Tify domain binding domain 645 695 IPR032308 -
Seca9g03330 1285 ProSitePatterns Zinc finger PHD-type signature. 723 762 IPR019786 -
Seca9g03330 1285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 711 783 IPR013083 -
Seca9g03330 1285 MobiDBLite consensus disorder prediction 1 80 - -
Seca9g03330 1285 CDD PHD2_CHD_II 723 762 - -
Seca9g03330 1285 MobiDBLite consensus disorder prediction 524 567 - -
Seca9g03330 1285 SMART PHD_3 722 763 IPR001965 -
Seca9g03330 1285 SMART PHD_3 764 823 IPR001965 -
Seca9g03330 1285 MobiDBLite consensus disorder prediction 317 340 - -
Seca9g03330 1285 MobiDBLite consensus disorder prediction 42 72 - -
Seca9g03330 1285 SUPERFAMILY FYVE/PHD zinc finger 712 768 IPR011011 -
Seca9g03330 1285 MobiDBLite consensus disorder prediction 368 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03330 Seca-Chr9 47060747 47068730 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03330 1 1033 PHD Transcription Factor Family AT4G14920 49.714 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca9g03330 TDBD 8.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03330 - - gmx:102666194 1756.88