Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03316 ATGTTCGATCATGACCTAGAATTTTCCAGTTGCTCGTGTGTTGGAGATCGTTTTTCGTTTCATTGTTGTTTGTGTGTAATACTCGGTCATAACAATATGTACGGTGGCTGTGACCTCATCAAGAGTTTGTATCCTGGGAGGCAGAATTGGAAGCTGAAGGTTAGGGTTGTCCGTCTATGGGATATGGCGCCAATTGATCAGCCGTCCCAACCATTTGCCATTGAAATGGTGCTGGTTGACTCTGAGGGTAACAGGATTCAAGCTTCTATTAGAAAGCCAATGATAAGAAGGTTCAGATCCGTGGTTGAAGAAGGACGAGTTTACCGGATGGCATCATTTGGTATTGTGAAGAATACTGGATCATTCAGGGCTGCCCATCATGAGTATAAGTTGCTTTTTCATGGAAGGACCCATGTGATACCATGCGAAGGACCGTCTATGCCCTTGCATGGACTGAGTTTGATTAAATCAGATGAAATAGTTCAGACGGATGGGCATTCTGACTATTTAGTTGATATGGTTGGTTTGCTAATTGTCGTGTCTACTGAGAAGTTATCTGTGAGGGATGGAAGGACCACCAGACACATTATTATGGAGCTCACAGATGAGAGGGGAAAGATTCAGTGTACAATGTTTGGGCATTATGTTGATGTGGTCAAGGAATATCTGAGCGGTGCTGGTGGGGATATTCCGGTGGTGATCGCACAGTTTGTCCGGGTTAAGAAGTATAAGGGAACAGTTGTCCTGCAAAACGTGATGAATACTTCAAGGGTCCTTTGGAGTCCTGAAATACTTGAGGCTGTTGAATTTAAAGATAGTATGATCTCGCATGGGTTCAACCAGGCTTCTGCTATTGGAGAGATTGGAGATACTTATAAGGAAGTTTCACTCAACGATGACTTTCTGGGGCTTTTCCCTAACAAGACGGTTAGTGAGTTACATGCCACGGAGGAGGAGGGTAGTTTTATTGTGCTGGCAACAGTTGCTTCTGTTTTGATGGAGGATACTTGGTGGTATAATGCATGTAAATGCATGAAAGCTGTTACTGAGGTTGATGGGAAATATTTCTGTCCCTCTTGCTGCGTTAATGTGGGCCAAGTTACTCCGAGGTTTAAGCTGAAGATAGAAGCGTTTGATGGGGAGGATACTGCTGCTTTTATCTTATTTGATTCCGATTCTGAACGACTCATGGGAAAGTCATGTGCTGAATTCATTTCTGGCAGTGAGGACCCAAAATCAAGTGAGTATCCGGAGGAATTCAACAAGGTGGTGGGTCGGCATCTTCTGTTCAAGGTTGAGAAGCTGTCTGATTATGCATTTAGCTTTGACGACACTTTTAAAGTGAGAAGAGTGTGTGACGACGCTGAGATTATTGAAAAGTTCAAGGAAGCTGGTGTGACAAAGACTCCTGAGATGGTTAACTTTTCTATCTGTTCATTTGTTTGTTATTTCAGTCCGTGTATGGGTTATTACCTTATGATTTAG 1485 0.431 MFDHDLEFSSCSCVGDRFSFHCCLCVILGHNNMYGGCDLIKSLYPGRQNWKLKVRVVRLWDMAPIDQPSQPFAIEMVLVDSEGNRIQASIRKPMIRRFRSVVEEGRVYRMASFGIVKNTGSFRAAHHEYKLLFHGRTHVIPCEGPSMPLHGLSLIKSDEIVQTDGHSDYLVDMVGLLIVVSTEKLSVRDGRTTRHIIMELTDERGKIQCTMFGHYVDVVKEYLSGAGGDIPVVIAQFVRVKKYKGTVVLQNVMNTSRVLWSPEILEAVEFKDSMISHGFNQASAIGEIGDTYKEVSLNDDFLGLFPNKTVSELHATEEEGSFIVLATVASVLMEDTWWYNACKCMKAVTEVDGKYFCPSCCVNVGQVTPRFKLKIEAFDGEDTAAFILFDSDSERLMGKSCAEFISGSEDPKSSEYPEEFNKVVGRHLLFKVEKLSDYAFSFDDTFKVRRVCDDAEIIEKFKEAGVTKTPEMVNFSICSFVCYFSPCMGYYLMI. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03316 494 CDD RPA1_DBD_A_like 51 139 - -
Seca9g03316 494 PANTHER OS03G0429900 PROTEIN 38 433 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca9g03316 494 Pfam Domain of unknown function DUF223 75 168 IPR003871 -
Seca9g03316 494 Gene3D - 146 283 IPR012340 -
Seca9g03316 494 SUPERFAMILY Nucleic acid-binding proteins 154 278 IPR012340 -
Seca9g03316 494 Pfam Replication factor-A C terminal domain 324 449 IPR013955 -
Seca9g03316 494 Gene3D - 39 144 IPR012340 -
Seca9g03316 494 CDD RPA1_DBD_C 311 432 IPR047192 -
Seca9g03316 494 SUPERFAMILY Nucleic acid-binding proteins 308 451 IPR012340 -
Seca9g03316 494 Gene3D - 306 464 IPR012340 -
Seca9g03316 494 CDD RPA1_DBD_B_like 172 275 - -
Seca9g03316 494 SUPERFAMILY Nucleic acid-binding proteins 39 146 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03316 Seca-Chr9 46988500 46990973 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03316 42 432 Core DNA Replication Machinery Family AT5G08020 22.249 2.14e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03316 - - lja:Lj6g3v0884310.1 415.616