Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03314 ATGGCAGATAATCCAAGTGATTGTCACATGATCAAGGACATAGTTCCTGGTTTTGATAGGTTGAAAATTAAGGCCCGGGTTAATCGTATGTGGGGTGTGCCAGATCCCATTTCTGCTTTTGGCTTTGTTAGCGTTGAGATGGTGCTGGCAGATGCACAGGGTTGTAAAATTCAAGCTACCATTACAAGGGAATTTATCAGGGCATTCCAGCGCAACATAGTAGAGGATAGAGTCTACTACTTCAAGTATCTATGCGTTGTTCCAAATGTGGGGACCTATAAGGAAACTAGACACATGTACAAGTTACTTTTTCAACGGAGAACACAGGTGGTGGATGCTGGCGCTGACTTGACCACCGACTTTGGGCTTTCCCCAATGACTAATTGGCAGCTGGTCAACTATAAAGGATACTTTGAATATTTAGTTGACTTTGTGGGCGCCATCACTGCTGTTTCATGTGTGAAGGAATGTGTTCAAGGGGGAACTACAAGGAAATATATTTCCATGGAAATCGCAGATGACACGGGCGTGATTGAATTAAGCTTATATGATGAATATGTGCCTTATGTGAAGGAGTATATGAGGTGTTTTGGACGTGCCAAGCCAATTATTGTCGTTCAGTATGCCAGAATTGTCCCTGCTGCTGGACAGTTATTTGGAAATTTTCTTATTCAAAACTATTACACAGCTACTAGACTCATTTTCAATGGCACGCTACCAGAAATAGTAGAGTTTAAAAATCGCATGTGTGCTTTGGGTCTTGTGGTTGATGGTACTTTGATCGTGAAAAAGGAAAGTGGAAATAAGCCAACGCTAAGGGATGACTTTCTCGCCTTGAATGGGAAGAGAGCTGTTACTGAGTTGGCCGCTGCTAAGGAGTGTGGGGTATATATTGTGCTTGCAACAATTGTCAATATCATGGAAGATGGCAAGTGGTGGTATTATTCCTGCAAGTGTAAGCGAACAGTGATGCTGGACGGTGAGGTCTTCTATTGTCCAGGTTGTTGCAAGAAGGTTGTTAACGTGACTCCTCGTTACAAGATTATTGTTAAGGTGTTTGATGGCTTGTGTGATGCCTGTTTTGCATTGTCGGATGAGGATCTCCAATATTTGGTGCACAAGTCATGTAAAGAGTTAATGGATGAAGTTGAGGCTTGTGATGAATTCAATTTTTTCCCATTAGTGCCAGTGGGGAAAGGAAAAGAAGTGGTTGTTTATGATGGAAAAGAGGAGGTGGTCCACACTGGAGTTCCAGTTAAGAGGAGTTTTCTGCCTGATGATCCGTTTGATTTTTTTGGTGATCTTAGATCAGTGAACAGGAGGTTGGATACCGGTGGAGCATCCTCTTCATTTAATGATCCATCAACAACCCACGAGGAGACTGGAAGTCATGTTGCAGATCTTACTTTACGGATCTGA 1419 0.4257 MADNPSDCHMIKDIVPGFDRLKIKARVNRMWGVPDPISAFGFVSVEMVLADAQGCKIQATITREFIRAFQRNIVEDRVYYFKYLCVVPNVGTYKETRHMYKLLFQRRTQVVDAGADLTTDFGLSPMTNWQLVNYKGYFEYLVDFVGAITAVSCVKECVQGGTTRKYISMEIADDTGVIELSLYDEYVPYVKEYMRCFGRAKPIIVVQYARIVPAAGQLFGNFLIQNYYTATRLIFNGTLPEIVEFKNRMCALGLVVDGTLIVKKESGNKPTLRDDFLALNGKRAVTELAAAKECGVYIVLATIVNIMEDGKWWYYSCKCKRTVMLDGEVFYCPGCCKKVVNVTPRYKIIVKVFDGLCDACFALSDEDLQYLVHKSCKELMDEVEACDEFNFFPLVPVGKGKEVVVYDGKEEVVHTGVPVKRSFLPDDPFDFFGDLRSVNRRLDTGGASSSFNDPSTTHEETGSHVADLTLRI. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03314 472 Pfam Domain of unknown function DUF223 46 114 IPR003871 -
Seca9g03314 472 MobiDBLite consensus disorder prediction 446 463 - -
Seca9g03314 472 Gene3D - 124 253 IPR012340 -
Seca9g03314 472 SUPERFAMILY Nucleic acid-binding proteins 292 385 IPR012340 -
Seca9g03314 472 SUPERFAMILY Nucleic acid-binding proteins 8 111 IPR012340 -
Seca9g03314 472 CDD RPA1_DBD_B_like 143 249 - -
Seca9g03314 472 Gene3D - 271 395 IPR012340 -
Seca9g03314 472 MobiDBLite consensus disorder prediction 446 472 - -
Seca9g03314 472 Gene3D - 8 113 IPR012340 -
Seca9g03314 472 CDD RPA1_DBD_A_like 22 110 - -
Seca9g03314 472 SUPERFAMILY Nucleic acid-binding proteins 138 250 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03314 Seca-Chr9 46977431 46980306 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03314 49 392 Core DNA Replication Machinery Family AT5G08020 21.111 3.36e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03314 - - lja:Lj1g3v3385890.1 233.802