Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03313 ATGGCCTCTCAATCTCTTTGCCAAAAAACAGAACACCCTTGCTTTATTTTTATTTTACCATTTTGGCTCTCCATCTTTGTTATCCTCATTTCCCTTAATCCCTCAAACCAATCTGAATCACCCCCTCCTCTCCCCAAACTGAATCCTAGATTATTGAAAGCTCACACGGCTCTTCAAGCATGGAAACATTCAATCATCTCGGACCCCAACAACATCATCTCCAATTGGTATGGTATCCATGTTTGTAACTACACTGGAATCTATTGTGCACCAGCCCCGGATGAGCCTCACATCTTTACAGTGGCTGGAATAGACTTAAACCACGCCAACATAACTGGTTCGTTACCGGATGAGCTTGGCCTCTTAACTGACCTAGCTCTTTTTCACATAAACTCCAATGACTTTTGTGGTTCCCTTCCTGATAGCTTTAGAAACCTTCACCTTCTCTATGAGCTAGATATTAGTGGTAACCGATTCTCAGGACCATTTCCTGAGGTTGTTCTTGACATTCCTTCATTGAAATACTTGGATATCAGATTCAATGAGTTCCAAGGCAACATTCCTTCGAGCCTCTTTGACCTTAAGCTCGACGCCCTTTTCATCAACAACAACAAATTCCAATTCTCTTTGCCTGAAAACCTGGGGAATTCCCCTGTTTCAGTTGTTGTGTTAGCAAATAATGACATCAAAGGTGGTCTTCCATCGTGTTTATACAAAATGAAGGACACCCTTAATGAGATTATCATTATGAATAGTGGGCTAATGGGATGTTTGACTCCAGAGATAGGATTTTTGGACAAAGTCACAGTGTTTGATGTGAGCTTCAACAACTTGTTTGGAGCATTGCCAGAAAGCATAAAAGGAATGAAGAGCTTGGAGCAGCTCAATGTGGCACATAACAACTTTTCTGCCAAAATTCCTGAGAGTATATGTACATTGCCCAAGTTGAAGAACTTCACTTATTCATACAATTACTTCAACAGTGAATCGTCAGAATGTATGAAGTTGCCACACAAAGATGTAAGAAAAAATTGTATACCCGATAGGCCAATGCAAAGGTCACCAAAGGAATGTGAATCTATTTACAATCACCATTTGGTTTGTAGTGCCTTTGGTGGCTCCTGTGCAAACCCACCACCTCCTCTCGCAACAACTTATAACCAATATCCATGA 1173 0.4092 MASQSLCQKTEHPCFIFILPFWLSIFVILISLNPSNQSESPPPLPKLNPRLLKAHTALQAWKHSIISDPNNIISNWYGIHVCNYTGIYCAPAPDEPHIFTVAGIDLNHANITGSLPDELGLLTDLALFHINSNDFCGSLPDSFRNLHLLYELDISGNRFSGPFPEVVLDIPSLKYLDIRFNEFQGNIPSSLFDLKLDALFINNNKFQFSLPENLGNSPVSVVVLANNDIKGGLPSCLYKMKDTLNEIIIMNSGLMGCLTPEIGFLDKVTVFDVSFNNLFGALPESIKGMKSLEQLNVAHNNFSAKIPESICTLPKLKNFTYSYNYFNSESSECMKLPHKDVRKNCIPDRPMQRSPKECESIYNHHLVCSAFGGSCANPPPPLATTYNQYP. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03313 390 Pfam Leucine rich repeat N-terminal domain 56 89 IPR013210 -
Seca9g03313 390 Gene3D Ribonuclease Inhibitor 221 378 IPR032675 -
Seca9g03313 390 Gene3D Ribonuclease Inhibitor 53 220 IPR032675 -
Seca9g03313 390 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 31 377 - -
Seca9g03313 390 SUPERFAMILY L domain-like 55 337 - -
Seca9g03313 390 FunFam Leucine-rich repeat extensin-like protein 1 55 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03313 Seca-Chr9 46948910 46950082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03313 15 372 Leucine-rich Repeat extension Gene Families AT3G22800 63.056 2.91e-156 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03313 - - gmx:100813811 510.76