Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03309 ATGCAGAAACCACTGGGCTCTTCTATACGACTTAGCGATTTTGTGCCTCTGCTTCCACAATCTTCCATCAATAGTGGTCAGAAAATACACATGGTTGATTCAGTTGTTTCTGGTTCTGAACATGAAACTGAAGATCAATGTTCTGAGCCAGTAGCAGCCACAGACACTGACCCCACACAGGACAATCTTGCCAATGTTGCTTTGATGACTAGCAATCCAAATGAGAAGGTGGATGATAAGCTTGTTTCTATCACGCACCGTGGTATAAGGAGGCGCTGCCTTGACTTTGAGATGGCCAGTGTGCGAAGGAAGAACTCAGATGATAATTCAAACACTGGATCCAGTACACCACAGCCTGATGAAGTAAGGAATGCTGCAAATGAAAAGCAACTGCTTCCTGCAAAACGCAATGGGAATTCACAAAGGTGCATTTTGCCAGGAATCGGTTTACACTTAAATGCACTTGCAACCTTAAAAGGTCACAAAGGCATACAAAATGAAAAGTTGTCTTCTGGAAGACAACTCAGTCTGCTCAGCTCTACTACTTCCTTGCAACTCTCCACAAGCCAAGAACATCAGCCTCTAGCCTTGGTATCTGTATCATCTGAAAGAGAATTGGATCCATCAGACAATGGTGTTCAGCCTGGTGAAGATTGTTCCCAGGCATCAGCTTACATGGCTGGTGAAGATTTCAATCCAAATAGCCCCAAAAAAAAAAGGCGTAAGTTGGAGCCAGCTGGAGAAACTGAGGGCTGCAAACGTTGTAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCATGAAGATACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGTAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAATTCTGATTCTGCACCTGAAATTGGGGATGACCCAAATAAAACTCCAGCTTCAGCACGGCACAAAAGAGGATGCAACTGCAAGAAATCAAACTGCCTGAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGGTGCAAGAACGCATATGGTAGAAAGGATGGTTCTGCTCCTATAGGAATAGAAGCTGAGCCAGAAGAAGAAACAGAAGCGAGTGACAAGGGTGTGGCAGAAAAAGCTTTACAGAAAACGGAAATTCAGAATATTGAAGAACATCCAGATTCTGCTGTTGTCTCAACACCGTTACGGCTTTCCAGGCCATTGCTTCCATTGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTGCAACCATCTCTGGTTCTGGATTGTTTGCCAGCCAGAAGCTTGGGAAACCCAATTCTCTTTGGTCTCAAGCTAAGCATTTTCAACCTGTTCCAGATGATGAAATACCTGATATTCTCCGTGGTGATAGCTCTCCTGTCCCTTGCATCAAAACTTCATCTCCAAATAGCAAGAGGATCTCCTCTCCTAACTGTGACTTGGGATCATCTCCTAGTCGCAGAGGAGGCAGAAAGTTGATATTACAATCTATTCCTTCATTTCCTTCTCTCACCCCTCATCCTTAG 1629 0.4377 MQKPLGSSIRLSDFVPLLPQSSINSGQKIHMVDSVVSGSEHETEDQCSEPVAATDTDPTQDNLANVALMTSNPNEKVDDKLVSITHRGIRRRCLDFEMASVRRKNSDDNSNTGSSTPQPDEVRNAANEKQLLPAKRNGNSQRCILPGIGLHLNALATLKGHKGIQNEKLSSGRQLSLLSSTTSLQLSTSQEHQPLALVSVSSERELDPSDNGVQPGEDCSQASAYMAGEDFNPNSPKKKRRKLEPAGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRNSDSAPEIGDDPNKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSISCRCEGCKNAYGRKDGSAPIGIEAEPEEETEASDKGVAEKALQKTEIQNIEEHPDSAVVSTPLRLSRPLLPLPFSSKGKPPRSFVATISGSGLFASQKLGKPNSLWSQAKHFQPVPDDEIPDILRGDSSPVPCIKTSSPNSKRISSPNCDLGSSPSRRGGRKLILQSIPSFPSLTPHP. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03309 542 MobiDBLite consensus disorder prediction 495 517 - -
Seca9g03309 542 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 44 541 IPR044522 GO:0003700
Seca9g03309 542 SMART CXC_2 336 377 IPR033467 -
Seca9g03309 542 SMART CXC_2 250 291 IPR033467 -
Seca9g03309 542 MobiDBLite consensus disorder prediction 39 59 - -
Seca9g03309 542 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 253 288 IPR005172 -
Seca9g03309 542 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 339 374 IPR005172 -
Seca9g03309 542 MobiDBLite consensus disorder prediction 105 123 - -
Seca9g03309 542 MobiDBLite consensus disorder prediction 477 542 - -
Seca9g03309 542 ProSiteProfiles CRC domain profile. 251 376 IPR005172 -
Seca9g03309 542 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03309 Seca-Chr9 46922533 46928091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03309 82 541 CPP Transcription Factor Family AT4G14770 54.927 5.96e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca9g03309 TCR 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03309 - - gmx:100804447 883.248