Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03289 ATGGCGGTGGCACGTAAGCTCAATTCAATTAAGGTAATCACGGATAGGAAGGAGTCTTGGAAGATACCTGTACGGATAGTTGATTTACGAGCAGTGCAAATTGCCCAGACAGGAGAAATCATCCAAATGACTCTGATGGATCAGAAGGGTGAAAAGATTGAGGCTCAAGTAAAAAAGGATGATTTCCATAAATGGAATACAAAACTCAAGGAGGGCACAAGCTATGTCATGGAGAACTTTGAAATTCAAAAAAGTGGTGGACAATATAGGGTATCTGACCATAACTTCAAATTGGTGTTCCACAAGTCTACAATTGTGACACCAAAGGATATTCCTATGATTCCGGAATACGTTTACTCCTTCACTAATTTTGAAGATATCTTCTCGAAAGTTGCTACATCTAATGTCTTAGTGGATATTATTGGTCATTTTGAACGAATAGTCCATTATCAACCCCAAAGTAATCCACTGAAAGTTGTGATAGCTTTGAAGAATGAAAGGGCTATAGAGATAAATTACACTTTGTGGGAGTCATTTGCAATTAAGATGATGTCATTCTTGGAAAAGCATGAAGCTGGACCCGTTGTTCTCATACTAAGGAATGCAAAGATCAAGGAAGAGAATGAGAAATATCCGATAAGTATTCAGAACTCAAAGTACAATTCAAAAGTTTTTATCAATGATGACAACATTCCTGAAATTGTGGAATATTTAACAAGATTGGGTGCAGTGGAAATTACTCAGTCTTATAGTCAGATGCTCACAAATTACTCATCATCATCTCAACTCTCTAACAAAGAAAAAATGTTACAAAATGCTGAAGTCAAAAGCTTGCGGGAAATTAAAGAACTGTCCAAGGAATGTTACTGTCTTACTGTAGCAAGTATTGAGAAGTATTACACGGCAAATGGGTGGTGCTATGATGCATGTGGAAAGTGCTCCAAGAAGGTGAAGGAATCACAAGTCCCATTTGTACATGAAAAGTGCAATGGCAGAAATATGAAGAGTGAAGGTGAGGTTGATCCTATGTGCTTTCCAGAGGCAATTGACGACATAATAGGGAAGGTCCTGGCTTTTAAGGTTAAGGTACAAGGGAATTTTGATGTAGGAATAGTTTCTCAACTTGAGAAAGAAAATAGTGAGCCATATAGTGCTATGTCCATTACAGCTGACTTTGATCCAACATCAATGAACTTGACTCCTGCAAAGAGAATGTCACCTGAGGTGGATATTGATGAATTCTCCCTTGAAAACATACCAAACTGTCAATTTTCCACTACAAAAAAGTTGACCAAGAAGACTATCAAGACCGACAAAGGCAACCTCAACTTGCTTTCCTTCGCGAGCTACATCAACCTCAATTTTGCTACAGAATGA 1377 0.3805 MAVARKLNSIKVITDRKESWKIPVRIVDLRAVQIAQTGEIIQMTLMDQKGEKIEAQVKKDDFHKWNTKLKEGTSYVMENFEIQKSGGQYRVSDHNFKLVFHKSTIVTPKDIPMIPEYVYSFTNFEDIFSKVATSNVLVDIIGHFERIVHYQPQSNPLKVVIALKNERAIEINYTLWESFAIKMMSFLEKHEAGPVVLILRNAKIKEENEKYPISIQNSKYNSKVFINDDNIPEIVEYLTRLGAVEITQSYSQMLTNYSSSSQLSNKEKMLQNAEVKSLREIKELSKECYCLTVASIEKYYTANGWCYDACGKCSKKVKESQVPFVHEKCNGRNMKSEGEVDPMCFPEAIDDIIGKVLAFKVKVQGNFDVGIVSQLEKENSEPYSAMSITADFDPTSMNLTPAKRMSPEVDIDEFSLENIPNCQFSTTKKLTKKTIKTDKGNLNLLSFASYINLNFATE. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03289 458 SUPERFAMILY Nucleic acid-binding proteins 9 108 IPR012340 -
Seca9g03289 458 Gene3D - 113 253 IPR012340 -
Seca9g03289 458 CDD RPA1_DBD_B_like 139 241 - -
Seca9g03289 458 Pfam Domain of unknown function DUF223 43 137 IPR003871 -
Seca9g03289 458 SUPERFAMILY Nucleic acid-binding proteins 119 241 IPR012340 -
Seca9g03289 458 Gene3D - 4 108 IPR012340 -
Seca9g03289 458 Gene3D - 255 337 IPR012340 -
Seca9g03289 458 CDD RPA1_DBD_A_like 21 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03289 Seca-Chr9 46658311 46662767 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03289 6 317 Core DNA Replication Machinery Family AT5G45400 23.284 1.52e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03289 - - lang:109325982 254.988