Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03265 ATGAGTACTGTTGGATACAGGTCAGATGAGGAATGCTCTGTCATAGGAGGAAAAGCTGATATCGGGTTTCTAGATTTTGAGGAAGAGAAATCTGTTTGCAGTTATGTTGGTAATGAAGGGGCTCCAGTTATTGTATCTGTCCCATTTGCATTTGTAGATGGGAAGCCTCGATCCGTACTTGTTGGAGATACTGCTGTGGATTTAATAACCATTAATAATACTACTGATGAACCTGTGGACCTGTGGAGTGTTCATATTTTTGCCTCAAATCCTCAGGACTCTTTCACTCTTTCTCTCATGGAACCTCCATTAGCAAATTCAAATGCAGATACAGTTGACAGCTTTTTAGAATCTTTCTCTTTGGAGGACAGGATGCTGCAGCCTGGCGAGGTCTTAAGAATATGGTTGTCTTGCAAGACAAAAGAAATTGGCATGTACTCATCAGTTGTGTATTTTGATGTTGGAGATGAAAAAATAGAAAGAGTGGTTTTCCTCTTAGTTGAAGACAAGATCTCAAAATCTTTGGCTCCTAACAGACCTTATTCAAAAGGAAGGAGAAAAGACAAATTTGTTGTAGATAATTATGTTTCTGGCTCACGTCCAGCAGGGAAGACATATCGAAGATATGCAAATAGGCTTCCAAGATATGACATTCCCCGGGACGTGAGACACCTGCTTCAGAGCAACCAAGTCCCTCAGATTATTGAAGAAGGTCTTACAAGAAAGAGTTATGCTTCTTATTTCAAAACATTAATAATAATGGAAGAGATACAATTGGAGGAAGACATGCGGACTTATGACATGGAATGCATAACCATGAGAAAGAGAGCCAATCAGTATTTGTCCTTGGAGGTTCCTGGGCTTGCTGAGAGAAGGCCATCACTGGTTCATGGGGATTATATCTTTGCCAAGCGGGCATCTGAACATGATAAAAACACCACACCCGTTTATCAGGGATTTATCCACCGGGTTGAAGCTGATGAGGTGTATTTGAAATTTGATCCTGAATTTCACCTTTACCATAGAGATGAAAATCTCTATGATGTTCACTTCACGTATAATAGAATCAATATGAGAAGGTTATATCAAGCAATTGAGGCAGCAGAAAACTTAGGAACTGAGTTCCTTTTTCCATCTACATCATCCAGAAGGAGGTCCATTAAAACCACTGCTCTGGTTCCCATATCTGGTACTTTTAATGAGCAGCAAGAGTGTTCAATCAAAATGATTTTGGGTTGCAAAGGCGCACCACCTTATGTGATTCATGGGCCTCCAGGTACGGGAAAGACTAGGACAATAGTAGAAGCAGTCCTCCAGCTGTACACACATCATAAGAATGCTCGTATTCTTATCTGTGCACCCTCAAATAGTGCAGCAGACCACATACTGGAGAAACTCCTTGTTCAACAGGATGTTGAATTTCATGAAAATGAAATATTCAGGCTCAATGCGTCTACCAGGCCATATGAGGATGTCAAACCTGAACTAATCCATTTCTGCTTCTTTGATGAGTTGATATTTAAGTGTCCCCCACACAGTGCCCTCAATCATTATAGGATCATAGTATCCACATATATGAGTGCTTCTCTTCTTTATGCAGAAGATGTTGCCCGCGGTCACTTCTCTCACATTTTCTTGGATGAGGCTGGCCAAGCTTCAGAACCTGAAACCTTGATCCCTATATCCCATCTCTGCAGAAAGGAAACTGTTGTTGTTCTGGCTGGAGACCCATTGCAGTTGGGTCCAGTAATATATTCCAAGACAGCAGATGAGTTTGGATTGGGGATTTCATACATGGAACGATTATTTGAATGTGAGTTATATTCCAGTGGGGATGTCAATTATGTAACAAAATTGATTAGAAATTATCGATGTCACCCAGAGATTTTATATCTCCCTTCAAAGCTGTTCTATGACGGGGAATTAATGGCATGTAGAGATTCCACAACTTTCATGGTGACTCCAGAGTTCCTCCCTAACAAGGAGTTCCCTATTCTTTTCTTTGGCATCCAAGGATGTGATGAAAGAGAAGGGAATAACCCATCATGGTTCAACCGAATTGAAGCAAGTAAGGTTGTAGAAGTTGTCAGGAGACTGATAGCTGGTGGGAATATAAGAGAGCAAGATATTGGCATAATAACACCATATAGGCAGCAAGTGTTGAAAATAAGACAGACACTTGAAAATCTAGATATGCCTGATATCAAAGTTGGTAGTGTTGAGCAATTTCAAGGACAAGAAAAGGAGGTTATTATCATATCAACTGTTCGATCAACCATCAAACACAATGAATTTGACAGAGTCCACTGTCTTGGTTTTTTGAGCAATTATAGAAGGTTTAATGTGGCTTTAACCCGTGCTATATCGTTGTTGGTTATAATTGGGAACCCCCATATTATCTGCAAGGATGATCACTGGAGCCAAATGTTGTGGTACTGTGTGGACAATTCATCTTATCAGGGTTCTTCTCTTCCGGAAAGGCTGGAACCTTGTGATGATGAGGACACTAGAGAGAACTCTTGCTTAGGCTTTAATGAAGATAATGCGTTAGCCTCTAACAATGTAGAATGGGGTCAAGATTCATCCCAGGCAGAGTTACCTAAACCTGTGACCGATGAAGCTGAGTGGTCTGATGGCTGGAGAAGCAATTAA 2652 0.4072 MSTVGYRSDEECSVIGGKADIGFLDFEEEKSVCSYVGNEGAPVIVSVPFAFVDGKPRSVLVGDTAVDLITINNTTDEPVDLWSVHIFASNPQDSFTLSLMEPPLANSNADTVDSFLESFSLEDRMLQPGEVLRIWLSCKTKEIGMYSSVVYFDVGDEKIERVVFLLVEDKISKSLAPNRPYSKGRRKDKFVVDNYVSGSRPAGKTYRRYANRLPRYDIPRDVRHLLQSNQVPQIIEEGLTRKSYASYFKTLIIMEEIQLEEDMRTYDMECITMRKRANQYLSLEVPGLAERRPSLVHGDYIFAKRASEHDKNTTPVYQGFIHRVEADEVYLKFDPEFHLYHRDENLYDVHFTYNRINMRRLYQAIEAAENLGTEFLFPSTSSRRRSIKTTALVPISGTFNEQQECSIKMILGCKGAPPYVIHGPPGTGKTRTIVEAVLQLYTHHKNARILICAPSNSAADHILEKLLVQQDVEFHENEIFRLNASTRPYEDVKPELIHFCFFDELIFKCPPHSALNHYRIIVSTYMSASLLYAEDVARGHFSHIFLDEAGQASEPETLIPISHLCRKETVVVLAGDPLQLGPVIYSKTADEFGLGISYMERLFECELYSSGDVNYVTKLIRNYRCHPEILYLPSKLFYDGELMACRDSTTFMVTPEFLPNKEFPILFFGIQGCDEREGNNPSWFNRIEASKVVEVVRRLIAGGNIREQDIGIITPYRQQVLKIRQTLENLDMPDIKVGSVEQFQGQEKEVIIISTVRSTIKHNEFDRVHCLGFLSNYRRFNVALTRAISLLVIIGNPHIICKDDHWSQMLWYCVDNSSYQGSSLPERLEPCDDEDTRENSCLGFNEDNALASNNVEWGQDSSQAELPKPVTDEAEWSDGWRSN. 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03265 883 PANTHER CANCER/TESTIS ANTIGEN 55 112 382 - -
Seca9g03265 883 FunFam Probable RNA helicase SDE3 624 822 - -
Seca9g03265 883 MobiDBLite consensus disorder prediction 858 883 - -
Seca9g03265 883 Pfam AAA domain 513 587 IPR041677 GO:0004386
Seca9g03265 883 Pfam AAA domain 399 494 IPR041677 GO:0004386
Seca9g03265 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 808 IPR027417 -
Seca9g03265 883 Gene3D - 624 824 IPR027417 -
Seca9g03265 883 CDD DEXXQc_Helz-like 400 624 IPR026122 GO:0003723|GO:0032574
Seca9g03265 883 Pfam AAA domain 596 797 IPR041679 -
Seca9g03265 883 FunFam Probable RNA helicase SDE3 348 493 - -
Seca9g03265 883 Gene3D - 325 610 IPR027417 -
Seca9g03265 883 CDD SF1_C_Upf1 625 813 IPR047187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03265 Seca-Chr9 46390369 46397123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03265 398 555 Core DNA Replication Machinery Family AT1G08840 28.571 2.17e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03265 K18422 - gmx:100801796 1508.81