Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03256 ATGAATGTGAATAGTAATAGTGAGAGAGGGATGATGAGTAAGTGGCCATTCACATTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATTTACAAGTACATGGTGGCTGGTGTTCCTGTGCCTCCTCATCTTGTCATTCCCATTCAGAACACCTTCCTACAGTACCCTCCCCCTACTGACTTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCAGGACGATGCAGGAGGACTGATGGGAAAAAGTGGAGGTGCTCCAAGGAAGCACACCCAGACTCTAAGTACTGTGAACGACACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACACAAACTATAACACACTCATCATCCACTGTGACATCACTCCCTGTAACTGGTGCCAGCAGAGGAACTGGAAATCTCCACAACCCTACCACAAATGCCTTTGGTTATCCCCAAGGTACTGGTTCTGGTTCTGGTTCTGGATCTGACCAAACCCAATATCATCTGGATTCCATTCCCTATGGGATCCCAAGTAAAGAATATAGGTATTTTCAAGGACCTAAATCTGAGGGTGGTGAACATAGCTTCTTTTCCAAAACTTTAGGAAACAACAAGGTTCTCCGGATGGAGTCACAGCTAGAAAACACTTTGATGCCAACTGGAGTTACCTCATTCTCTACATCGAGATCAAATAATAATTCCATGTTGCAGGGTGATTGTCTACAACCTTCTCTTTTATCTAGTGAATATGCTTCCGGCGAAACTGTGAAGCATGAGGGGCAGTTTCTTCGACCTTTCTTTGATGAATGGCCTAAAAGCAATGAGTCATGGTCTGGTCTGGAAGATGAGAGATCCAAGCAGACAGCTTTCTCCACAACTCAACTCTCAATATCCATTCCTTTGCCATCATCAAACTTCTCTACAACCAGCTCTCAATCCTCACATGGTCTTTGGCCACATGCGCACGTGAATACCACAAACATGGAGATCTCAGCACTGGACCAGAAGCAGAAGCAGAAGCAACTCCTTAATTCCCTTTCCCACTGGAAGCATACCCTTCTGCAAAGTTTAAAGATGAAGTTTGTCTCTCTGCAAAGTAAGGCAACTTCTCTTGTACGGTTCAGTCAAGCCCAGATAGTGTACCTGTATTGGTTCCTAGTCTCTCATGTGCACCCATTTTTTATTCACCTCTGTTATTTCATAATCATATCCCTGTTAGGTTATCTGGCTTTGAAGTTCTCAAAGCCAAGAACTTTCCCTGTTTACCCCAATGACTTTGACTTATTCTTCACCTCTGTCTCGGCTTCCACACTTTCTGGCCTTTCTGTAGTGGAAATGGAGGTTCTCTCCAATAACCAACTCATCATTATTATCATCCTCATGTTACTTGGTGGGGAGGTTTTCACTTCCATGCTTGGACTTGTGTTTGCTTGGTTTAACTTCCCCAAGCAGCATCAAAGTAACCCAAATTCTACAACCTTTGAGACTCAAACTGAGCTGGATATAGTACATATCTCTGATTCTGAGTCACAGAATAAAAACTACCAAGTTGCTATTTTTCCAAATAGTAATGTGGATACTTTGAATCTGAATGTTAAGCACAATGCTATTAGGTATCTGGGGTATGTTGTTCTGGGTTACCTTACTATAGTTCTCTCTGTGGGTTGGATTCTGGTGTTCACATATTTCAGCGTTGTACCCAGTGCAAAAGAAATTCTCAGAAACAAGGAACTGAATATACATACATTTTCAGTGTTTACAGTAGTTACAACTTTTGCCAATTGTGGACTTCTCCCTACGAATGAGAACATGATGGTTTTGAAGAAGAACACAGGTCTTCTTCTGCTTCTCATTCCATTTGGCCTTGTGGGAAACACGTTGTACCCTCCATGCCTGCGGCTAGTAATCTGGGCATTGGCAAAATGTAGCAAAAGAGAGGAATTTTTTTACATTTTGAAAAATGATAGAGAAATGGGTTATTATCCCTTGCTTTCTGGTTTGCATTGCTGTCAGCTGGCTATTACTGTTTTTTTGTTGGTTGGCACACAGTTTGTGTTGTTCTGTTCTCTGGAGTTGAACTCAGAAAACTTGAAGGGTTTGCATTTCCATCAGAAATTGGTTGCCCTTTTGTTTCAAACTGTGAATTCAAGGCATGCAGGTGAATCAGTACTTGACCTTTCTACACTCTCTTCCGCCATGTTGGTGCTCGTCAATGTCATGATGTATATGCCGCCATACACGAGGTTTTTGGGCATAATAAGGGAAAGGGAGAGCGAAGAGAAGAAGAAGGGTAGCAATAGAAGAAGGAATTTAGCGGAGAGTGTTATGGTGTCACAGAGCTCTTATATGGCCATTTTCGTTATTCTGATATGCATCACTGAGAGAGACAAGTTAAGACGAGATCCCCTCAACTTCAACCTCTTGACCGTTACAACAGAACTCATCGGTGCATATGGGAATGTGGGGTTTTCCACTGGATATAGCTGTGAGAGGCAATTGGATATTGATGGTACTCTCTGCAGTAAGAAACATTGGAGCGGTTTGGCAGGGCGTTGCAGCAGCCAAGGAAAAGCGTTACTCATTCTCGTCATGTTTTTTGGCAAGCTTAAAAAATTCAGCGCCAATGGCGGCAAAGCATGGCTCCTATCTTAG 2664 0.4317 MNVNSNSERGMMSKWPFTLSQWQELEHQALIYKYMVAGVPVPPHLVIPIQNTFLQYPPPTDLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVESQTQTITHSSSTVTSLPVTGASRGTGNLHNPTTNAFGYPQGTGSGSGSGSDQTQYHLDSIPYGIPSKEYRYFQGPKSEGGEHSFFSKTLGNNKVLRMESQLENTLMPTGVTSFSTSRSNNNSMLQGDCLQPSLLSSEYASGETVKHEGQFLRPFFDEWPKSNESWSGLEDERSKQTAFSTTQLSISIPLPSSNFSTTSSQSSHGLWPHAHVNTTNMEISALDQKQKQKQLLNSLSHWKHTLLQSLKMKFVSLQSKATSLVRFSQAQIVYLYWFLVSHVHPFFIHLCYFIIISLLGYLALKFSKPRTFPVYPNDFDLFFTSVSASTLSGLSVVEMEVLSNNQLIIIIILMLLGGEVFTSMLGLVFAWFNFPKQHQSNPNSTTFETQTELDIVHISDSESQNKNYQVAIFPNSNVDTLNLNVKHNAIRYLGYVVLGYLTIVLSVGWILVFTYFSVVPSAKEILRNKELNIHTFSVFTVVTTFANCGLLPTNENMMVLKKNTGLLLLLIPFGLVGNTLYPPCLRLVIWALAKCSKREEFFYILKNDREMGYYPLLSGLHCCQLAITVFLLVGTQFVLFCSLELNSENLKGLHFHQKLVALLFQTVNSRHAGESVLDLSTLSSAMLVLVNVMMYMPPYTRFLGIIRERESEEKKKGSNRRRNLAESVMVSQSSYMAIFVILICITERDKLRRDPLNFNLLTVTTELIGAYGNVGFSTGYSCERQLDIDGTLCSKKHWSGLAGRCSSQGKALLILVMFFGKLKKFSANGGKAWLLS. 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03256 887 SMART QLQ_2 15 51 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca9g03256 887 ProSiteProfiles WRC domain profile. 73 117 IPR014977 -
Seca9g03256 887 Pfam QLQ 16 50 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca9g03256 887 Pfam WRC 74 116 IPR014977 -
Seca9g03256 887 ProSiteProfiles QLQ domain profile. 16 51 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca9g03256 887 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 373 887 - -
Seca9g03256 887 Pfam Cation transport protein 536 837 IPR003445 GO:0006812|GO:0008324|GO:0055085
Seca9g03256 887 MobiDBLite consensus disorder prediction 105 170 - -
Seca9g03256 887 MobiDBLite consensus disorder prediction 114 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03256 Seca-Chr9 46305301 46313594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03256 416 886 Inorganic Solute Cotransporters AT4G10310 46.362 5.24e-133 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca9g03256 TrkH 1e-23 CL0030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03256 K24976 - gmx:100779582 494.582