Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03206 ATGGAGAGTGTGCCACCGTTCCTGAGCAAGACGTACGACATGGTGGATGACCCTTCCACCGACTCTGTGGTGTCGTGGGGTCATAACAACAACTCCTTTGTTGTTTGGAATGTTTCTCAATTCGCCACTCACATCTTGCCTAACCATTTTAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGTTGAACACTTACGGTTTTAGGAAGGTTGACCCAGACCGATGGGAATTTGCAAATGAAGGATTTTTAAGGGGTAAAAAACAACTTTTGAAGACTATCAGTAGGCGGAAATCTGTTCATGTAAATGGTAGTCCACAACCGTCTCAAGTTCATAACTCACCTGTTGGGGCATATGTTGAAGTGGGGAAGTTTGGGCTTGATGAAGAGGTGGAAAGACTGAAGAGGGATAAGAATGTTCTTATGCAGGAACTTGTCAGGTTAAGACAGCAACAGCAAGTGACTGATAACCAGTTGCAAAGTGTTGGGCAACGTGTGCAGGCCATGGAGCAGCGTCAGCAGCAAATGATGTCATTCCTTGCAAAGGCCGTGCAGAGTCCAGGTTTCTTGGCTCAATTTGTACAGCAGCAGAATGAAAGTAATAGACATATCACTGGTGGCAATAAAAAGAGGAGGCTCCATAGGCAGGAAGAAGATAGTTCAGCCACAAACCATCTCCATAATGCTCTTGATGGACGTGTGGTCAGGTACCAGACTTCCACAAATGAGTCTGCAACTGCATTATTACACCAGATATTGCAAACAAACAATTCTGGAACAATGGAATCATCAATTAAGAGCCCTGATGCATTCCTTATTGACAATGTTTCTTCTGCCATTGCAACAAATAGTATTTCATCCACACAGGTTTCTAATGTGACCCTTTCTGTGGTTCCACCTATTTCTGTGCAGACATGTATGGGAATCGGATCAAAATTTCCTGTCGATTGTATGCCCAAGCCCAACGCCGTATCAGAGGTGCAATCTTCACCTGCCGTGTTGACTGACTGTGTCAAAACTGCTGAATTTTCAGAATTAACTGTGCATAATTGTCAAGATAATGTCTTGGATTTTTGTAAAGTTCAAGGGATAGAAACAGAAAGCAGTTTAGGGGGGGCTGACACTGGGAATGTGGAGGAGATAGATATGATTGCAGCTGTTTTGGATGGAATGCTCTTTGTAGAAGCTGACCATTTTTCATCTGATGCAGGTGGAATTTCTAAACTCCCAGGAATCAATGATGAATTCTGGGAACTGTTTGTAAGGTCAAGCGGCCCACTTACTGGAGACACAGAAGAAATTAACTGTAGCTCTCTAGGATGTGGTTTGACCAAAGACCAGGGTTTGCCTTCAGAAAAGGAAAATGAACATGAAAAAATGGAAAAGATACAGCACGTTGATCATCTCACTCAGCAGATGGGAATTCTTGCAACAGAGTCTTAA 1440 0.4333 MESVPPFLSKTYDMVDDPSTDSVVSWGHNNNSFVVWNVSQFATHILPNHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKQLLKTISRRKSVHVNGSPQPSQVHNSPVGAYVEVGKFGLDEEVERLKRDKNVLMQELVRLRQQQQVTDNQLQSVGQRVQAMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESNRHITGGNKKRRLHRQEEDSSATNHLHNALDGRVVRYQTSTNESATALLHQILQTNNSGTMESSIKSPDAFLIDNVSSAIATNSISSTQVSNVTLSVVPPISVQTCMGIGSKFPVDCMPKPNAVSEVQSSPAVLTDCVKTAEFSELTVHNCQDNVLDFCKVQGIETESSLGGADTGNVEEIDMIAAVLDGMLFVEADHFSSDAGGISKLPGINDEFWELFVRSSGPLTGDTEEINCSSLGCGLTKDQGLPSEKENEHEKMEKIQHVDHLTQQMGILATES. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03206 479 ProSitePatterns HSF-type DNA-binding domain signature. 46 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g03206 479 Gene3D - 1 97 IPR036388 -
Seca9g03206 479 SUPERFAMILY "Winged helix" DNA-binding domain 3 96 IPR036390 -
Seca9g03206 479 MobiDBLite consensus disorder prediction 197 229 - -
Seca9g03206 479 SMART hsfneu3 3 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g03206 479 FunFam Heat shock transcription factor 1 1 97 - -
Seca9g03206 479 Coils Coil 123 150 - -
Seca9g03206 479 PRINTS Heat shock factor (HSF) domain signature 45 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g03206 479 PRINTS Heat shock factor (HSF) domain signature 58 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g03206 479 PRINTS Heat shock factor (HSF) domain signature 7 30 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g03206 479 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 3 263 IPR027725 -
Seca9g03206 479 Pfam HSF-type DNA-binding 7 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03206 Seca-Chr9 45504192 45508105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03206 3 479 HSF AT5G16820 50.205 9.38e-140 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca9g03206 HSF_DNA-bind 6.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03206 K09419 - gmx:100793665 614.764