Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03197 ATGCCATTGGATGAGATAAATGGGTTAACAGGAAATTTTGGTTCAAAGGCTTTTATTGGTAAAGGTTCCTATGGGAGGGTTTTCTATGCAAAATTGAGTGATGGAACTGAAGCTGCAATTAAGAAGCTTGATACCAGTTCTTCACAAGAACCTGACACTGATTTTGCTGCTCAGTTATCAGTTGTTTCAAGACTGAAGCATGATCATTTTGTGGAGTTGATTGGATATTGCCTAGAGGCAGACAACAAAATATTGGTTTATCAATATGCAAGTTTGGGTTCATTGCATGACATATTACATGGAAGGAAGGGTGTACAAGGAGCATGA 327 0.3823 MPLDEINGLTGNFGSKAFIGKGSYGRVFYAKLSDGTEAAIKKLDTSSSQEPDTDFAAQLSVVSRLKHDHFVELIGYCLEADNKILVYQYASLGSLHDILHGRKGVQGA. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03197 108 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Seca9g03197 108 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 108 - -
Seca9g03197 108 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Seca9g03197 108 SUPERFAMILY Protein kinase-like (PK-like) 4 103 IPR011009 -
Seca9g03197 108 ProSiteProfiles Protein kinase domain profile. 13 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03197 108 Pfam Protein tyrosine and serine/threonine kinase 18 102 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03197 Seca-Chr9 45371906 45372424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03197 3 106 Receptor kinase-like Gene Family AT3G55950 41.667 1.38e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca9g03197 PK_Tyr_Ser-Thr 2.1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03197 - - gmx:100786291 200.675