Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03193 ATGGGAACACAACCCCAGCAAGCATGTCGGGAGGAAGAGGAGGAGGAACTTCCAGGTCGTGGAGCTACAATTTCTTGTCAGTCAATGTCAACTAGCAGAAGTGTTGGGTCACCATCCAGCCGGAGCGAACAGACAATGGCAACACCAATAAATGATAACACTTTTCTTAGATTAAACCATCTTGACATACATGGTGACGATGCTCACAGGGCGCAGTTGCACAGTAGCAAGAAGAAAAAGAGAGGCCAACGTGCTGTTGGAGGTGATAAGAGTGGGAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAAAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGATCCAGGCAATAGTGTTTCATCCCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAAGATATACAATGGAAGGGTCTTCCTCGCACTAGTCTGAATGATATTGAAGAACTAAAGGCAGAGCGTCTGGGGCTGAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAACTGGAGGACCAATACATAGGTCTTCAGAACCTCATACAACGAAATGAGCAATTATATAACTCAGGAAATGCTCCCAGTGGAGGGGTGTCTTTGCCTTTTATTCTAGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGACAACTATGTTCTCAAGGCAATGAAATTCTGTGATAGATCTCAGAATGATAATGTAACACATAATCCTACAGATGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTATCATGCTCAGGTTCCTACCTTAGTTTCAAACCCGCCAGTTAGGCCTCCCTCGTCCCCACCACTCCCTGGAATATTAAAGGCAAGAGTTAAGAATGAACATCGATCTGCAATTTTGTCATATTGTCTCGCCTCTTTAGGCATGTTTGTATATTTTGTAAAGTAA 1089 0.4279 MGTQPQQACREEEEEELPGRGATISCQSMSTSRSVGSPSSRSEQTMATPINDNTFLRLNHLDIHGDDAHRAQLHSSKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVSSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKDIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEDQYIGLQNLIQRNEQLYNSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRSQNDNVTHNPTDGGEGSSMSGLYHAQVPTLVSNPPVRPPSSPPLPGILKARVKNEHRSAILSYCLASLGMFVYFVK. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03193 362 SMART DP_2 180 340 IPR014889 -
Seca9g03193 362 Gene3D - 85 178 IPR036388 -
Seca9g03193 362 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Seca9g03193 362 MobiDBLite consensus disorder prediction 23 48 - -
Seca9g03193 362 Coils Coil 189 223 - -
Seca9g03193 362 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Seca9g03193 362 FunFam Transcription factor-like protein DPB 85 178 - -
Seca9g03193 362 PANTHER TRANSCRIPTION FACTOR DP 23 313 IPR015648 GO:0005667|GO:0051726
Seca9g03193 362 SUPERFAMILY E2F-DP heterodimerization region 179 296 IPR037241 -
Seca9g03193 362 Gene3D Transcription factor DP 179 301 IPR038168 -
Seca9g03193 362 MobiDBLite consensus disorder prediction 1 48 - -
Seca9g03193 362 MobiDBLite consensus disorder prediction 69 93 - -
Seca9g03193 362 CDD DP_DD 178 281 IPR014889 -
Seca9g03193 362 FunFam Transcription factor-like protein DPB 179 303 - -
Seca9g03193 362 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Seca9g03193 362 PIRSF Txn_factor_DP 3 342 IPR015648 GO:0005667|GO:0051726
Seca9g03193 362 Pfam Transcription factor DP 181 296 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03193 Seca-Chr9 45339739 45349888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03193 91 289 E2F-DP Transcription Factor Family AT5G02470 54.500 5.25e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca9g03193 DP 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03193 K04683 - gmx:100797603 556.984