Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03191 ATGAAATCTGGCACAGATCCAACTACTGAAATTCCAGTGCATGAAGAATTGACAAATTCTGCAGATAGTCCCACATTGGCTGATCTTTTGCATCAGCATGTTACTGAAGAAAAAGAAGATGCTAACGGGAGAAAAAAGGATGGTACAATGTCAAGTTCTCTAAGGAAGCATGGGAGATCTTCAATAACTGGCGAGGAGGGTAAAGGTGGTAAAACTTCAAGGCAGCTGAGAAAACAAGCAGCTCATAAACCTGCTAAATACTCATTGAATGAGGATGTTGAGGATGATGATGACCTTGACCCTCCTTATAATTGTAATATAGATGAACTTCAAGAAAATGGTGATGACTATGAAGTGGATTATTCGTCCAAGAAGAAAAGAGCGTCAACAAGTTCAAAGAAGAAGTCTGCAGCTAAAAATGGAAAGACATCTCAAAAGCGTAAGAAGGCTGATGATGATTTAGAAAAAACTACTAAAGAACCTCCCAGAAAGTTCTCTCATTCAACCCGACGAAAAAAAAGATGTGTTGACAAGGCTCTGCTGGAAATTCCTGAGGATGAACTTGATCCTCGAACCTTGCCCATTAAGGATATCATTTTACTTGCAGAATATAGAGAGCGGCTGGCGAAAAAGGAGGCAACAACTTCAAAAACATCTTCCACCAATCAAAGTGGTAGAGATTTTCTACATGAAGCTGATGCTAATGATGAAGAGGAGATATTTGGATCAGAAGATGGTAGAGACCCAGGTGATGATCAAGCCAGTGAAGAGATTCCATTAGCTCCCTCTTTATTTAATTACCAGTCTTTCATGGACAAGGCACCTAGGGGGAAATGGTCAAAACAAGATACTGAACTGTTTTATGAGGCTGTTAGAGAGTTTGGCACAGATTTTTCTATGATACAACAACTTTTTCCTGGTCGAACACGTCATCAAATTAAGTTGAAGTACAAGAAGGAAGAGCGGAAGCATCCTTTACAGTTATCTGATGCTCTAAATAATCGTGCAAAAGATCACCCGCATTTTAAATTGGTGATTGAGCGACTACAACAAGCTTCTACCAAGGCAGAACAAGACCCAGGCAAAGATGCCTCGGATTTCATGACTGGGGAGGAGGTTGAGGAACCGATACCTGAAACTAATGAGGAGGTTGCACCAACTAAGCAGGACACCGATGTTAAAGATCAGGAAGGTCCTGTGGAATTACATAGTCCAGAGCAATCTGAAGATAGTGATGGTGACTTTCAAAGATGGTCTCAATATAAAAGTGATTATTAG 1278 0.4038 MKSGTDPTTEIPVHEELTNSADSPTLADLLHQHVTEEKEDANGRKKDGTMSSSLRKHGRSSITGEEGKGGKTSRQLRKQAAHKPAKYSLNEDVEDDDDLDPPYNCNIDELQENGDDYEVDYSSKKKRASTSSKKKSAAKNGKTSQKRKKADDDLEKTTKEPPRKFSHSTRRKKRCVDKALLEIPEDELDPRTLPIKDIILLAEYRERLAKKEATTSKTSSTNQSGRDFLHEADANDEEEIFGSEDGRDPGDDQASEEIPLAPSLFNYQSFMDKAPRGKWSKQDTELFYEAVREFGTDFSMIQQLFPGRTRHQIKLKYKKEERKHPLQLSDALNNRAKDHPHFKLVIERLQQASTKAEQDPGKDASDFMTGEEVEEPIPETNEEVAPTKQDTDVKDQEGPVELHSPEQSEDSDGDFQRWSQYKSDY. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03191 425 SUPERFAMILY Homeodomain-like 277 325 IPR009057 -
Seca9g03191 425 MobiDBLite consensus disorder prediction 144 164 - -
Seca9g03191 425 MobiDBLite consensus disorder prediction 210 258 - -
Seca9g03191 425 MobiDBLite consensus disorder prediction 128 143 - -
Seca9g03191 425 ProSiteProfiles SANT domain profile. 278 322 IPR017884 -
Seca9g03191 425 MobiDBLite consensus disorder prediction 214 228 - -
Seca9g03191 425 ProSiteProfiles Myb-like domain profile. 271 321 IPR001005 -
Seca9g03191 425 MobiDBLite consensus disorder prediction 352 425 - -
Seca9g03191 425 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 2 425 - -
Seca9g03191 425 FunFam Predicted protein 279 360 - -
Seca9g03191 425 Gene3D - 279 342 - -
Seca9g03191 425 Coils Coil 107 127 - -
Seca9g03191 425 MobiDBLite consensus disorder prediction 1 26 - -
Seca9g03191 425 Pfam Myb DNA-binding like 269 352 IPR039467 -
Seca9g03191 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 271 327 IPR017930 -
Seca9g03191 425 SMART sant 275 323 IPR001005 -
Seca9g03191 425 CDD SANT 278 319 IPR001005 -
Seca9g03191 425 MobiDBLite consensus disorder prediction 1 173 - -
Seca9g03191 425 MobiDBLite consensus disorder prediction 385 425 - -
Seca9g03191 425 MobiDBLite consensus disorder prediction 31 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03191 Seca-Chr9 45331379 45335461 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca9g03191 Myb_DNA-bind_7 1.4e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03191 K15198 - gmx:100792788 533.487