Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03185 ATGATGAGGCTGAAGACATATGCGGGTCTTAGTTTGATTGCAACTCTGGCTATTACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCAGCATTGGTATATCTGTCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTTATTATGTGTATTTTATGGCAATTAACAAAAAAGGTATTCCTGGGTTCCCTCCGAGAGGCAGAGGTTGAGAGACTTAATGAGCAATCATGGAGGGAGATTATGGAAATCCTATTTGCAATTACTATTTTTAGGCAGGACTTCTCTGTTACATTCCTTGCAATGGTCACGGCACTGCTGTTAATTAAGGCTTTGCATTGGTTAGCTCAAAAGAGAGTAGAGTACATTGAGACCACCCCTTCAGTGCCCATGTTGTCCCATATTCGTATTGTATCTTTTATGGGTTTCCTCCTCCTTCTAGATAGCATTTTCTTATACAGTTCTACGAAGCATTTGATAGAAACGTGGCAGGCTTCAGTATCACTATTTTTTTCTTTTGAGTACATGATACTAGCAACAACAACGGTTTCAATTTTTGTAAAATATGTTTTCTATGTTAGTGACATGATTATGGAAGGACAATGGGAAAGGAAACCAGTCTTCACATTTTACCTGGAACTTGTTAGGGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGCATTCCCTTGCACCTGATACGGGAGCTGTACGAGACATTTAGGAACTTCAAAGTTCGTGTTGCAGATTACATACGATATCGTAAGATCACTTCAAATATGAATGATCGCTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTTTATGTGGACACCTTTTTCATGTTCATTGCCTCCGATCATGGCTGGAGCGGCAACATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACAAGTGTAGCTGGAGGGCAGCAAGGATCACAATCAGATGGTCATCGACAGGGGACTGGCACTGGAAACACAGCTCAAACTGAGGTTGGCAGTGGGGTGGCAACTGATAGTTTGAGTCGGCATCAAGCCAGACTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTTTATCCCTCGGCAACTTCTTTTGTATGCTCTCCCGGGTACACACACTATCCCCCGGCTCAAATATCTATGGCTGAGTCTACTAATACTGACCTTAATGGAGAACAAGCTTCCAGTGAACAAGCACAAAAGCAGTTTCTTATCCCTGGTGGACCAACAAATGTATCATTTCCTCCAATGGGACACTACCATTCTCTACCTTCCCAAACACAAACAGTCCCTGTGAATTATGGAGAGGGGTTTGGAAATGATCCAAATAACCAAAGCTCTCAGCTGGAAGCTCATAGAAAATTTCTACAATGGCAGATTGAGATTCTGCAAAATCAGTTCCAGAATATGCAGAGGACGAAGGCTGATAGAAATGTAGATGATGGCACATCATCATCAGCTAGCGGAAGCAGGCTTATCTCTTCCTCCTCATCTGTTTCTGGTCATGGTTACCATGAGGAGATTCAAGATGGAAAAGCATAA 1665 0.4216 MMRLKTYAGLSLIATLAITYHAFNSRGQFYPALVYLSTSKISLVLLLNMGLVIMCILWQLTKKVFLGSLREAEVERLNEQSWREIMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHIRIVSFMGFLLLLDSIFLYSSTKHLIETWQASVSLFFSFEYMILATTTVSIFVKYVFYVSDMIMEGQWERKPVFTFYLELVRDLLHLSMYLCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLLCGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTSVAGGQQGSQSDGHRQGTGTGNTAQTEVGSGVATDSLSRHQARLQAAAAAASIYEKSYVYPSATSFVCSPGYTHYPPAQISMAESTNTDLNGEQASSEQAQKQFLIPGGPTNVSFPPMGHYHSLPSQTQTVPVNYGEGFGNDPNNQSSQLEAHRKFLQWQIEILQNQFQNMQRTKADRNVDDGTSSSASGSRLISSSSSVSGHGYHEEIQDGKA. 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03185 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Seca9g03185 554 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Seca9g03185 554 Pfam Ring finger domain 291 330 IPR001841 -
Seca9g03185 554 MobiDBLite consensus disorder prediction 521 544 - -
Seca9g03185 554 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Seca9g03185 554 SMART ring_2 292 329 IPR001841 -
Seca9g03185 554 Coils Coil 494 514 - -
Seca9g03185 554 MobiDBLite consensus disorder prediction 340 376 - -
Seca9g03185 554 SUPERFAMILY RING/U-box 272 336 - -
Seca9g03185 554 CDD RING-H2_synoviolin 289 330 - -
Seca9g03185 554 PANTHER RING ZINC FINGER PROTEIN 1 527 - -
Seca9g03185 554 MobiDBLite consensus disorder prediction 514 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03185 Seca-Chr9 45291401 45297800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03185 1 517 C3H Transcription Factor Family AT3G16090 66.089 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03185 K10601 - gmx:100816441 921.768