Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03167 ATGGAGGATGAACAAAGGAGGCTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGGAGGAAGAAGGAAGAAGCTGAAAGAGAAAAGCATGGTGAAGCAAGTGCTAATGAACCTGAGTCTGGAAAGACCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACAGGTACTGGGAAGCAAAATACAGCTATCGATGTAGATGGAGATGACAAACCTGCTGCTAAGGAACCTATGGAGTCGATGGCGGTAGATGTTGATAATGGAACAGTTGCATCTGATTTACAAAATGGAGCTGCTGGTGCTCCTGCAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTTACCTCATCACTTTCTGATAAAGCTGCAGACTTGAAACCCAAGGATAAAGGGGATGAACGAAGTAATGGTACACAGTCAAAGAAAGGTACAAATAAATCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGGAGATCTTGAAGTTGAGGGGGACCCATTAGATGAAGATGATGATGAATTCATGAAAAGAGTGAAAAAGACAAAAGCTGAGAAGCTTTCTATTGTTGATCACTCAAAGATTGATTACGAACCATTCAAGAAGAACTTTTATATTGAAGTGAAGGAGATCTCAAAGATGACTCCTGAAGAAGCTGCAGTATATAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTAAAATCATGGCACCAAACTGGACTTACTAGCAAAATTTTGGAGACAATAAAGAAGCTGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCACTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGCATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTCCTGCCAATGTTGAGGCATATCAAAGATCAACCACCAGTTGTTGCAGGAGATGGTCCTATTGGGCTTATTATGGCCCCTACAAGAGAACTCGTTCAACAGATTCACAGTGATATAAAGAAGTTTACAAAGGTACTGGGTCTCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGCAGTGGAAAAATAACTAACCTGCGCAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACACGAATTGTTCAGAATATTCGACCAGATCGTCAAACGGTTCTCTTCTCTGCTACTTTTCCCCGTCAAGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATAGCACAGCTAGTTGAGGTGAGGCCTGAAAATGAGAGGTTCCTTAGACTCTTGGAAATATTGGGAGAATGGTATGAGAAAGGAAAGATCTTGATATTTGTCCACTCACAGGAGAAGTGTGATGTTTTATTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGATCAGACAGACCGTGAATCCACAATTTCTGATTTTAAAAGCAATGTCTGCAATTTATTGGTTGCAACAAGTGTTGCTGCCAGGGGATTAGATGTCAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCAAACCACTACGAAGATTATGTACATCGTGTTGGACGCACTGGACGAGCTGGCCGAAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGATGCAAGATATGCCCCAGATCTGGTGAAAGCCTTGGAGCTATCTGAGCAGATTGTTCCTGATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAAGCAGCAAAGAAAGCGCAAGCCAAAGAATATGGGTTTGAAGAAGATAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTCTTGCTCAGATTCTTGCTGCCACGAAAATGAACTCTACTGCAATGCCTACTCCTATCTCTGCTGCCCAGCTGATTTCAAATGGTGGACTACCTGTTTCTTTGCCAGCTGTTCTTGGTCTCCAGACTGCAACAGTCCTGCCTGGGACAGGGCTACCCCTTGCTGCAAATGATGGGGCAGCTCGAGCAGCATTAGCTGCTATGAACCTGCAGCACAACTTGGCAAAAATACAATCCGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTAGGTGGAAAGTTACACACAAGGAAACTTTAGGCCCCATTTCGGAATGGACTGGAGCTGCCATTACCACTAGGGGGCAGTATTTCCCACCTGGCAAAATCCCAGGACCTGGGGAGCGCAAACTCTACTTGTTCATTGAGGGTCCTAGTGAGCAGTCAGTTAAGAGAGCCAAAGCAGAATTGAAGCGTGTTTTGGAGGACATCACAAATCAAGCTTTGCAACTTCCTGGTGGAACTCAACCAGGCAAATACTCTGTTGTATAA 2715 0.4365 MEDEQRRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEASANEPESGKTWTLEGESDDEEGTGTGKQNTAIDVDGDDKPAAKEPMESMAVDVDNGTVASDLQNGAAGAPADEEIDPLDAFMNSMVLPEVEKLNNAVTSSLSDKAADLKPKDKGDERSNGTQSKKGTNKSIGRIIPGEESDSDYGDLEVEGDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYEPFKKNFYIEVKEISKMTPEEAAVYRKQLELKIHGKDVPKPVKSWHQTGLTSKILETIKKLNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLEILGEWYEKGKILIFVHSQEKCDVLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKMNSTAMPTPISAAQLISNGGLPVSLPAVLGLQTATVLPGTGLPLAANDGAARAALAAMNLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGTQPGKYSVV. 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03167 904 Pfam DEAD/DEAH box helicase 291 462 IPR011545 GO:0003676|GO:0005524
Seca9g03167 904 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 266 294 IPR014014 GO:0003724
Seca9g03167 904 MobiDBLite consensus disorder prediction 682 696 - -
Seca9g03167 904 MobiDBLite consensus disorder prediction 181 197 - -
Seca9g03167 904 Pfam Helicase conserved C-terminal domain 500 608 IPR001650 -
Seca9g03167 904 CDD SF2_C_DEAD 487 617 - -
Seca9g03167 904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 625 IPR027417 -
Seca9g03167 904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 648 IPR027417 -
Seca9g03167 904 Coils Coil 868 891 - -
Seca9g03167 904 MobiDBLite consensus disorder prediction 145 162 - -
Seca9g03167 904 MobiDBLite consensus disorder prediction 1 43 - -
Seca9g03167 904 FunFam probable ATP-dependent RNA helicase DDX17 228 478 - -
Seca9g03167 904 Gene3D - 476 651 IPR027417 -
Seca9g03167 904 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 421 429 IPR000629 -
Seca9g03167 904 CDD KH-I_AtRH42_like 802 903 - -
Seca9g03167 904 MobiDBLite consensus disorder prediction 138 197 - -
Seca9g03167 904 CDD DEADc_DDX46 255 476 - -
Seca9g03167 904 MobiDBLite consensus disorder prediction 682 713 - -
Seca9g03167 904 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 647 IPR001650 -
Seca9g03167 904 SMART ultradead3 285 490 IPR014001 -
Seca9g03167 904 Gene3D - 218 475 IPR027417 -
Seca9g03167 904 PANTHER RNA HELICASE 212 688 - -
Seca9g03167 904 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 475 IPR014001 -
Seca9g03167 904 SMART helicmild6 527 608 IPR001650 -
Seca9g03167 904 MobiDBLite consensus disorder prediction 1 114 - -
Seca9g03167 904 Coils Coil 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03167 Seca-Chr9 45140622 45145259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03167 253 628 Eukaryotic Initiation Factors Gene Family AT3G19760 32.632 4.21e-61 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03167 K12811 - gmx:100784306 1572.37