Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03166 ATGGCTGGAGGTGTTTTCCAACAGTTACTGAGGAGGAAACTCCAATCTCATTCTCCGAGTTATTCTATGTCATCTGTTGTCACAAAGAAAGATGGTGCTGGCTCTACTGGCAGCAGCACTATAAGAGCCCTTGCGCTAATTGGAGCTGGTGTCTCTGGTTTATTGGGTTTTGCGACAACAGCATCAGCTGATGAAGCTGAGCATGGCCTAGCATGTCCAAGCTATCCATGGCCTCACAAGGGCATCCTCAGTTCATATGATCATGCTTCGATTCGCCGTGGTCATCAAGTTTATCAACAAGTGTGTGCTTCTTGTCATTCTATGTCTTTGATATCGTACCGTGATTTGGTTGGTGTTGCTTATACGGAAGAAGAGGTAAAAGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTTACACGCCCTGGTAAACTCAGTGATCGCTTTCCTGAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCAGATCTAAGTCTTATTACTAAAGCTCGTCACAATGGTCAAAACTATGTGTTTGCCCTTCTAACTGGTTATCGTGACCCCCCTGCTGGTGTTTCGATTAGAGAAGGACTGCACTATAATCCTTACTTTCCTGGTGGAGCCATTGCCATGCCTAAAATGCTTAATGATGGCGCTGTTGAGTATGAAGATGGTACCCCGGCTACAGAATCCCAGATGGGGAAAGATATTGTGTCATTCTTGTCTTGGGCTGCTGAACCTGAGATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTACTATCACTGGCATTACTTCAAGCTGCCTATTATCGTCGCCTTCGATGGTCTGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG 921 0.4539 MAGGVFQQLLRRKLQSHSPSYSMSSVVTKKDGAGSTGSSTIRALALIGAGVSGLLGFATTASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPEPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMGKDIVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03166 306 PRINTS Cytochrome C1 signature 95 114 IPR002326 GO:0009055|GO:0020037
Seca9g03166 306 PRINTS Cytochrome C1 signature 173 197 IPR002326 GO:0009055|GO:0020037
Seca9g03166 306 PRINTS Cytochrome C1 signature 261 276 IPR002326 GO:0009055|GO:0020037
Seca9g03166 306 PRINTS Cytochrome C1 signature 75 94 IPR002326 GO:0009055|GO:0020037
Seca9g03166 306 PRINTS Cytochrome C1 signature 140 160 IPR002326 GO:0009055|GO:0020037
Seca9g03166 306 PRINTS Cytochrome C1 signature 242 261 IPR002326 GO:0009055|GO:0020037
Seca9g03166 306 PRINTS Cytochrome C1 signature 211 222 IPR002326 GO:0009055|GO:0020037
Seca9g03166 306 PRINTS Cytochrome C1 signature 222 241 IPR002326 GO:0009055|GO:0020037
Seca9g03166 306 Gene3D - 66 261 IPR036909 GO:0009055|GO:0020037
Seca9g03166 306 PANTHER CYTOCHROME C1 32 304 IPR002326 GO:0009055|GO:0020037
Seca9g03166 306 Pfam Cytochrome C1 family 77 293 IPR002326 GO:0009055|GO:0020037
Seca9g03166 306 FunFam Cytochrome c1, heme protein, mitochondrial 262 306 - -
Seca9g03166 306 Gene3D - 262 305 - -
Seca9g03166 306 ProSiteProfiles Cytochrome c family profile. 89 196 IPR009056 GO:0009055|GO:0020037
Seca9g03166 306 SUPERFAMILY Cytochrome c 70 260 IPR036909 GO:0009055|GO:0020037
Seca9g03166 306 FunFam Cytochrome c1, heme protein 66 261 - -
Seca9g03166 306 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 261 305 IPR021157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03166 Seca-Chr9 45119245 45125898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03166 1 306 Chloroplast and Mitochondria Gene Families AT3G27240 85.621 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03166 K00413 - gmx:100803087 566.614