Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03151 ATGGTTAAACACAATAACGTTATCCCAAATGGACACTTCCGGAAACACTGGCAGAACTATGTGAAGACATGGTTTAATCAACCTGCCAGGAAAACCCGCAGACGACTTGGTAACAACTCTATTTTTCCTTGTCTTTCTTTCATTTCTCCTTTGGCCCCTTACCCAACCCATGTGTTTCTGTCAAAACCAAGACAGAAGAAAGCTGTGAAAATCTTCCCTCGTCCAACTGCTGGGCCACTCCGTCCCATTGTTCATGGCCAGACTCTGAAATATAATATGAAAGTGAGGGCTGGTAGGGGCTTCTCTTTGGAAGAATTGAAGGCAGCTGGGATTTCAGATAAAGTTGCAGGGACTATAGGGATTGCTGTTGATCACAGAAGGAAGAACCGTTCTTTGGAGAGTCTTCAGGCTAATGTTCAGAGGCTGAAGACATACAAGGCGAAGTTAGTTGTCTTCCCAAGACAATCTAGGAAATTTAAGAATGGTGACTCTGCTCCAGAGGAGCTAGCTACAGCAACACAGGTCCAGGGTCTGTACATGCCCATTGTACGTGAGAGGCCATCTGTGGAGTTTACAAAAGTTACTGATGAGATGAAGTCATTCAAGGCATACTATAAACTGCGTCTAGAGAGGACGAACCAGCGTCACATGGGTGCAAGGTTGAAGAAAGCTGCTGAGGCTGAGAAGGAAGAGAAAAAGTAG 702 0.4516 MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLGNNSIFPCLSFISPLAPYPTHVFLSKPRQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGISDKVAGTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRQSRKFKNGDSAPEELATATQVQGLYMPIVRERPSVEFTKVTDEMKSFKAYYKLRLERTNQRHMGARLKKAAEAEKEEKK. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03151 233 Gene3D - 193 233 - -
Seca9g03151 233 FunFam 60S ribosomal protein L13 192 233 - -
Seca9g03151 233 Hamap 50S ribosomal protein L13e [rpl13e]. 71 154 IPR001380 GO:0003735|GO:0005840|GO:0006412
Seca9g03151 233 ProSitePatterns Ribosomal protein L13e signature. 96 110 IPR018256 GO:0003735|GO:0005840|GO:0006412
Seca9g03151 233 PANTHER 60S RIBOSOMAL PROTEIN L13 1 36 IPR001380 GO:0003735|GO:0005840|GO:0006412
Seca9g03151 233 Pfam Ribosomal protein L13e 7 36 IPR001380 GO:0003735|GO:0005840|GO:0006412
Seca9g03151 233 Pfam Ribosomal protein L13e 63 211 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03151 Seca-Chr9 44971117 44972596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03151 2 218 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 70.968 4.48e-111 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03151 K02873 - gmx:100805957 337.806