Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03146 ATGGAAGAAGCAAGAAGAAGCATTGATATTAATGAAGAAGAAGGTGCATTGATTTCGTATCGAGGAGTACGGAAGCGAAAGTGGGGGAAATGGGTGTCAGAAATAAGGGAGCCAGGGAAGAAAAGCAGAATTTGGTTAGGGAGTTATGAGGAACCCCAAATGGCAGCAGCAGCATGTGATGTAGCCGCGTTGCACCTCAAAGGACGCGCAGCAAGGCTCAACTTTCCCCAATTTGTTGACACTATGCCTCGTCCAGCAACCTCTAAACCTGAAGATGTCAGACTCGCAGCTCAACAAGCAGCGTTGCTCTTCAGGACACCACCATCATCTGATCATCAGGGAATTAGTAGTGCAGTTCCTGCAGTGAGGGTGGGGTTATCACCCACTCAAATTCAGGCCATCAATGAGTCCCCTTTGGATTCACCAAAGATGTGGATGCAAATGGCTGAGGCACTCATGTTTGGCTTTGATGATCACCATGATGTCTTAGAGTTGAGTGGATGGGAAGAAATTCAGTATGACTCCTTGTGGGACTCCTGA 540 0.4759 MEEARRSIDINEEEGALISYRGVRKRKWGKWVSEIREPGKKSRIWLGSYEEPQMAAAACDVAALHLKGRAARLNFPQFVDTMPRPATSKPEDVRLAAQQAALLFRTPPSSDHQGISSAVPAVRVGLSPTQIQAINESPLDSPKMWMQMAEALMFGFDDHHDVLELSGWEEIQYDSLWDS. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03146 179 FunFam Ethylene-responsive transcription factor 2 19 77 - -
Seca9g03146 179 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Seca9g03146 179 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Seca9g03146 179 Pfam AP2 domain 20 68 IPR001471 GO:0003700|GO:0006355
Seca9g03146 179 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Seca9g03146 179 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Seca9g03146 179 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Seca9g03146 179 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Seca9g03146 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 144 - -
Seca9g03146 179 CDD AP2 20 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03146 Seca-Chr9 44942679 44943218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03146 11 178 AP2-EREBP Transcription Factor Family AT1G71450 49.711 4.23e-52 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g03146 AP2 7.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03146 - - gmx:100788567 241.506