Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03144 ATGACTGTGGGACAGTTCGTGGCCAAGTTTGAAGAACTCTCCAAGTATCACTCCCTGCTGCAAGCCAATCCTAATGAGGGTTGGAAATGCTCTCACTTGGAGGCGGGCCTCAAGCCCGAGATCAGGAAGATTGTTTCATCCTTTCAGCTTAAGGAATTCTCAGCCTTGGTGACCAAGTGTCTGGTCGTCGAGCAAAGTTTAGTGGATGAGATGCCCAGGTCTGCGACGAAGACTTGGGTTGAGGGTAAGAGGAAGAGAGTGGGTACACCTACCAGCCATATGATTGGGGATTGCCCAAAGAAGAAGAAGGACCAGCTCAAACCCCAAGCTACCGGGAGAGTCTTCACCCTCAATGGTGAGGTGGCGACTCAGGCCGATGATCTGATGCAAGGTACATGTAATCTAAATGATACTCCTTTGATTGTACTGTATGATTCTGGAGCAACTCATTCCTTCATTTCTTGTGACTGTGTGGAAAGGATGAAATTGCATGTTATTCCCTTACCTTTTCATTTGAATGTCCACACCCCGGCTAAGGAAGCCATTTCCACTTCCTTAGTTTGTCTTGCATGTCCCTTAGAAATCCAAGGTAGGATCTTTAAAGTTGATTTGATTTGTTTGCCATTGAAGAAGCTTGATGTTATTTTGGGTATGAACTGGTTATCTCGTAACCAGGTCATGCTTGATTGTTGCAATAAAGAAATTGTTTTCCCTACTCTTCTTCCTTCCCCGAAGGAGAGGCCATCCTATTTGTTATCTTGCTCCACTCAAATTTCTGAGTGTCTGATTGATGGTAGTTATTGTTTTATATTACTGCTTTCCTCAACTGTAGTGTCGAAACCCGACCTAGACAACATAGCCATTGTTAGGGAGTTCCAGGATGTTTTCCCTAGTGAGGTGACCACCTTACCTCCGGATCGAGAGACTGAGTTTTCTATAGACTTTGTGCCGGGCACAAGGCCTATTTCCAAGGCTCCCTATAGGATGTCACCCTGTGAGGCGAAGGAAAAGCCAAACTCTAAACAATGGCTCGACTTCGTCCGTGTGAACCCAGACCCAGTGTCGTGCTTAAGGGATCACTTTCGGCCGTGCGTTTGTTGCAGGGGTGAGCCTGGATCGTGTACTGACTTCCTTTTAGCAAATCTTCTGAACCCAGGAAATGTTTCCTGGATCGACGCGGATTCAACCTTGTTGGAGGTGTTGGAGCGTCCTTTAGGTTGGAGTGGTAAAACCGTTTCGAAAGTAATAGATCGTTTGAATGATTTTTGCTTTGAAATCGACATAGGTTGCTGCGTGTTGAGTGTTCGCTACAAAATTCAAGATCCCCGATTTTATACTGGAGTCATGAACGAGTTTGGCGAAGGATGTAGCAGGATGAATGGGGAGGAGCCAATGATGGAGGCATTGAATGATTTGAGGTTGGAATCAGAAGAGGTGCGTAGTGGTGAAGACACGGAAGGTGATTTGGTTGTGAACGATGAAGAAGAAGCAGAGGATGAGGGGGGAGGTTTTCAGTATAGGTGTGTTGAGGATAACGGCGGAAACAATGATGATGAACGTATAGAAATTAATAATGTCGGGGATATAGTGAAGTTGGATTTAAAGAATTTAAGCCCGCATGAGGTTGGTTTATATTATGATTTTCAGAGTTTGGAATTGGCTGCCGATTTTTATAAAAGTTACGCAAGGAAGAACGGCTTTGCTGGTCGTGAGGGTAAGAAAAGGCACAATAAAGATGGAGTTGTGATACAACAAGCGTTTGTTTGCAACAGGGAAGGATTCAGAAGAGAGAGAGATGGTGGCACCCCGTCACAACGAAAACGACGTGCTAATACGAGGTGTGGCTGTAAGGCAGAATTCCGTGTGCATGTTAATGTGTTGTCTGGTAGGTGGTATGTGACATGGTTTGACGATGATCATAACCATGATCTGATGTCGGATGCTCATTGCGGGATGTTACCCGCTCATCAAAAGATGAGTAAAGGTCATGTTATGCAAATGAACAATTTCTTGAAGGCAGGTATACGTCCACCACACATATTGGCTGCATTCGCTCGTCAGGCAGGGGGGTATGAGAAGGTAGGGTTTCGTAAAAAGCACATGTACAACCAGATTGGTCAGCAAAGGCGTAACCAAGGCGATGATGGGAAAAGTGCTATAGGCTATCTACAATGGTTGGGCTTAAAGGATTCCCTAATGTGCTGTAAACACGTAGAAGATGCAAATGGGAGCGTCAGACACATGTTTTGGTCTAATGGTCTAAGCCAGATTAGCTACCAAGCATTCGGTGATGTTTTAGCATTTGATGCTACTTACCGTAAGAACAAGTATCGATATCCCGTGGTTATATTTTCAGGTGTCACTCACCATAACCACACAACTATTTTTGCATGTGGGATAGTTTCAAATGAGACAGAAGAGACTTATGTTTGGTTATTGGAACAGTTCAATGCAGTAATGAAAGGCAAGTCCCCGGTTTCTGTAATCACTGATGGGGATTTGGCGATGAGGAATGCTATCAAAAGGGTTTATCCAAACGCCCACCATCGGTTGTGTGCATGGCACCTTATTCGCAATGCAACAAGTAATGTGTCTAATCCGGGCTTCACTGCTGCATTTACAAGGTGTATGTTGGGTGACTATGACATTGGACAATTTAAGAGAAAGTGGACAACAATGGTGAATCAGTTTGGGTTACAAGAAAATAGGTGGGTGAGGGAAATGTATGATAAAAGAAAGATGTGGGCAACTGCTTATATCCGTGGGAATTTTTTTGCAGGGTTCAGAACAACTTCCCGTTGTGAAGGATTGCATTCTCAAATACGTAAGTACGTTCACTCACAAAGCAGCCTGACAGAATTTGTCCAGCAGTTCCAACGCTGCTTGTATGAAATGCGGTTCAGGGAAGCGAAAGCTGATTTTGCCTCGGTACATGGGGAGCCTGAATATCATGGTCAATTACGAAGCCTGCAAATATCTGCTACCAAGCTATTTACTAGGGAGATGTTTGATATTTTCCTTCCTGTGCTTGACAGAGCTGCTATATTGAAAGTGACTGGGCAGAGGGAGAATTACCCAAGTGTGATATATGTGGTGCAAAAATACCAAGTTGATGAGAAGGAGTGGTATGTGACTTGTAACCTATTGAGCAATGAATATAGGTGTTCATGTCTAAGAATGGAGTCTTATGGCATGCCATGTGACCATATGATTGCTGTGTTAGTGTACCTAAATATAAGTGAGGTTCCGAAATGTATGGTTATGCAAAGATGGTGCAAGGGAGCTAAGTCTGTACTATGTGGTGAGCTTGGTCAAGGATCAAATTTCTGGGACACAGAATCTGTTGGCAGATTTGCTTCCTTGTTGGATGTATATTATAATGTGTGTAGACTGGCTAGTAAGAGTGTTGATGACTACAATGAGCAGTATGAGAAGGGCATGAATGATTATAACCATTTGAAGGAGAAGAATGGGCATGTAAGTGATGATGAAGAAAGTCGAAGGCAGGGTGGGAATGGTGGTGTTAGAGGTGGAAGGATTCAGAGAGGTAGGGGACGTATAGGGAGTACCTCATCAACTCCACGGTTGTGGTCAAAGCGAACCACCCATTGCAGTTTGTGTCATGTGGCTGGTCACAATAGGTTAACTTGTCCCCTTCGGGAACAACTTAGTGAGATGATTGAGCAAATGTGTGGGACTTCTATACCCCATGGAGATGTAGATCTTTCTTTTAGCAATGAGGACTTCAATATGTCTTGGGAGTGGATTGGGTTTGCAGCATGGACATCGTGTGATAGTAGTGGAGTGTGA 3810 0.4412 MTVGQFVAKFEELSKYHSLLQANPNEGWKCSHLEAGLKPEIRKIVSSFQLKEFSALVTKCLVVEQSLVDEMPRSATKTWVEGKRKRVGTPTSHMIGDCPKKKKDQLKPQATGRVFTLNGEVATQADDLMQGTCNLNDTPLIVLYDSGATHSFISCDCVERMKLHVIPLPFHLNVHTPAKEAISTSLVCLACPLEIQGRIFKVDLICLPLKKLDVILGMNWLSRNQVMLDCCNKEIVFPTLLPSPKERPSYLLSCSTQISECLIDGSYCFILLLSSTVVSKPDLDNIAIVREFQDVFPSEVTTLPPDRETEFSIDFVPGTRPISKAPYRMSPCEAKEKPNSKQWLDFVRVNPDPVSCLRDHFRPCVCCRGEPGSCTDFLLANLLNPGNVSWIDADSTLLEVLERPLGWSGKTVSKVIDRLNDFCFEIDIGCCVLSVRYKIQDPRFYTGVMNEFGEGCSRMNGEEPMMEALNDLRLESEEVRSGEDTEGDLVVNDEEEAEDEGGGFQYRCVEDNGGNNDDERIEINNVGDIVKLDLKNLSPHEVGLYYDFQSLELAADFYKSYARKNGFAGREGKKRHNKDGVVIQQAFVCNREGFRRERDGGTPSQRKRRANTRCGCKAEFRVHVNVLSGRWYVTWFDDDHNHDLMSDAHCGMLPAHQKMSKGHVMQMNNFLKAGIRPPHILAAFARQAGGYEKVGFRKKHMYNQIGQQRRNQGDDGKSAIGYLQWLGLKDSLMCCKHVEDANGSVRHMFWSNGLSQISYQAFGDVLAFDATYRKNKYRYPVVIFSGVTHHNHTTIFACGIVSNETEETYVWLLEQFNAVMKGKSPVSVITDGDLAMRNAIKRVYPNAHHRLCAWHLIRNATSNVSNPGFTAAFTRCMLGDYDIGQFKRKWTTMVNQFGLQENRWVREMYDKRKMWATAYIRGNFFAGFRTTSRCEGLHSQIRKYVHSQSSLTEFVQQFQRCLYEMRFREAKADFASVHGEPEYHGQLRSLQISATKLFTREMFDIFLPVLDRAAILKVTGQRENYPSVIYVVQKYQVDEKEWYVTCNLLSNEYRCSCLRMESYGMPCDHMIAVLVYLNISEVPKCMVMQRWCKGAKSVLCGELGQGSNFWDTESVGRFASLLDVYYNVCRLASKSVDDYNEQYEKGMNDYNHLKEKNGHVSDDEESRRQGGNGGVRGGRIQRGRGRIGSTSSTPRLWSKRTTHCSLCHVAGHNRLTCPLREQLSEMIEQMCGTSIPHGDVDLSFSNEDFNMSWEWIGFAAWTSCDSSGV. 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03144 1269 Gene3D Acid Proteases 117 242 IPR021109 -
Seca9g03144 1269 ProSiteProfiles Zinc finger SWIM-type profile. 1044 1078 IPR007527 GO:0008270
Seca9g03144 1269 Pfam Retroviral aspartyl protease 110 237 - -
Seca9g03144 1269 Pfam FAR1 DNA-binding domain 556 645 IPR004330 -
Seca9g03144 1269 SUPERFAMILY Acid proteases 126 229 IPR021109 -
Seca9g03144 1269 MobiDBLite consensus disorder prediction 1150 1195 - -
Seca9g03144 1269 Pfam MULE transposase domain 765 859 IPR018289 -
Seca9g03144 1269 CDD retropepsin_like 132 221 - -
Seca9g03144 1269 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 547 1143 IPR031052 GO:0006355
Seca9g03144 1269 SMART 26again6 1053 1080 IPR006564 GO:0008270
Seca9g03144 1269 Coils Coil 1136 1156 - -
Seca9g03144 1269 MobiDBLite consensus disorder prediction 1150 1170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03144 Seca-Chr9 44886930 44893932 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g03144 RVP_2 5.1e-46 CL0129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03144 - - tpra:123913749 719.153