Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03130 ATGGGGTGCATCTGCTCAAAAGAGTCCTCAAACAAAGACAAAGTTGATGAATATGAGAAAGAAAAAGAGTTTAGCAAGTCTTCAGTACAATTGGTTGCTCCTGCACAGTTTGATGGTGGTGGCATGGATGGTTCAGGGCCTCGTTTGGCTAATCCATCCTCACAAGCAATTTGGGGAGATGATAAAAACTTAGATAGCCAGCATCAGAAATATAAGAAAATAGATGAAAAAAAGCCACTAATGAGTAGAATACTTAGTGTGCAACATTGTGTAGGACAACACATTGATGCTGGTTGGCCAATATGGTTATCTTCAGTGGCAGGAGAAGCCATCAAAGGGTGGGTGCCTCGACGGGCAGACTCTTTTGAAAAATTAGACCAAATTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCTTGACCTTGAAACTGGTAAATATGTGGCTTTGAAGAAAGTTCGTTTTTCAAGTACAGATCCAGAAAGTGTGCGTTTCATGGCAAGGGAAATCTATATATTGCGTCAACTTGACCATCCTAATGTCATCAAACTTGAAGGTCTTGTCACATCAAGCAACTCCACCAGTTTGTACCTTGTTTTAGAGTACATGGAGCATGACCTTGCTGGTCTAGCAGCTACACCCGGCGTAAAATTCACTGAAGCACAGGTACATATTACTAGCGTGTTTGGTTTACATCAAATTCATTCACGGGTTTTGCAGATTAAATGTTACATGAAGCAACTGCTTTGTGGGCTTGAACACTGTCATAATAGGGGTGTGCTGCACCGTGACATCAAGGGTTCAAATCTTCTGCTTGACAACAACGGAAATCTTAAGATTGGGGATTTTGGTCTTGCTACTGTTTATGAACCTGATAAAAAGCAGCCTTTGACTAGCCGTGTTGTGACTCTATGGTATAGGGCACCTGAACTTTTGCTAGGTGCTACAGACTATGGAGCTGCAATTGACTTATGGAGTGTTGGTTGCATTCTAGCAGAATTGCTGGTGGGGAAGCCAATCATGCCCGGAAGAACAGAGGTGGAACAAATGCACAAGATTTTTAAGCTTTGCGGATCCCCATCAGAAGAGTATTGGAAGAGAACAAAATTTCCACATGCAACAAGTTTTAAACCACAACACCGTTACAAACGCCAAGTGGCTGACACATTTAAAAGCTTTTCTTCTGTGGCATTGGCTCTTGTTGATAAGCTCCTTGCCATAGAACCAGACCATCGAGGTTCTTCAACTTCAGCACTCAACAGTGAGTTCTTCACTACAAACCCCCTTCCTTGTGATCCTTCAAGTTTACCAAAGTTTCCACCAAGCAAGGAATTTGATGCCAAGCGCCGAGATAAGGAAGCAATAAGAAAAAACACAGAAGCTGTTAAAGGACGTGGACCGGTATCTGTTTTAAGGGGAGCAGGAGATACCAAAGTAATGGAAACACCCGAGTATAATGCAAGGGGAGATATATCTATGCGGGGGAAGACAAATAGTAGAATGTCCCACTCCCATCTCAAATATGAAACCCAAGAGGATGGTGGGTCTCACCACAAGTGTGAGGCAACTAGAGTATCCCTACAGAATGGCTATACACATTCTTCTTCAATGATGCACGGTGGTACAGCAGGACCATACTCATTGAATAAGAGGCCAGAAACATCTAAGAAGAATCCAGAGTTACGGAAACAGAGTTCTCATTTGAATCAGGAAGCAGTAGATTTCTCTAACTCTTCTACTAAAAAGGAACCAGGCCGAGACCTTGGGATGGGGTATGTGCCTAAGAAGAATAGGATCCACTGCTCTGGACCATTGGTGCCTCCGGGTGGGAACATTGATGACATGCTCAGAGAGCATGAACGGTTAATGCAAGATGTTTTCCGTAGTGTCAAGAAAGCCAATCAAGAAAAACAGTGA 1917 0.4304 MGCICSKESSNKDKVDEYEKEKEFSKSSVQLVAPAQFDGGGMDGSGPRLANPSSQAIWGDDKNLDSQHQKYKKIDEKKPLMSRILSVQHCVGQHIDAGWPIWLSSVAGEAIKGWVPRRADSFEKLDQIGQGAYSSVHKALDLETGKYVALKKVRFSSTDPESVRFMAREIYILRQLDHPNVIKLEGLVTSSNSTSLYLVLEYMEHDLAGLAATPGVKFTEAQVHITSVFGLHQIHSRVLQIKCYMKQLLCGLEHCHNRGVLHRDIKGSNLLLDNNGNLKIGDFGLATVYEPDKKQPLTSRVVTLWYRAPELLLGATDYGAAIDLWSVGCILAELLVGKPIMPGRTEVEQMHKIFKLCGSPSEEYWKRTKFPHATSFKPQHRYKRQVADTFKSFSSVALALVDKLLAIEPDHRGSSTSALNSEFFTTNPLPCDPSSLPKFPPSKEFDAKRRDKEAIRKNTEAVKGRGPVSVLRGAGDTKVMETPEYNARGDISMRGKTNSRMSHSHLKYETQEDGGSHHKCEATRVSLQNGYTHSSSMMHGGTAGPYSLNKRPETSKKNPELRKQSSHLNQEAVDFSNSSTKKEPGRDLGMGYVPKKNRIHCSGPLVPPGGNIDDMLREHERLMQDVFRSVKKANQEKQ. 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03130 638 SMART serkin_6 122 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03130 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Seca9g03130 638 MobiDBLite consensus disorder prediction 531 589 - -
Seca9g03130 638 Coils Coil 616 636 - -
Seca9g03130 638 FunFam probable serine/threonine-protein kinase At1g54610 109 204 - -
Seca9g03130 638 MobiDBLite consensus disorder prediction 531 552 - -
Seca9g03130 638 ProSiteProfiles Protein kinase domain profile. 122 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03130 638 Gene3D Phosphorylase Kinase; domain 1 117 215 - -
Seca9g03130 638 Pfam Protein kinase domain 122 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03130 638 Gene3D Transferase(Phosphotransferase) domain 1 232 464 - -
Seca9g03130 638 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Seca9g03130 638 FunFam probable serine/threonine-protein kinase At1g54610 225 464 - -
Seca9g03130 638 CDD STKc_CDK9_like 122 424 - -
Seca9g03130 638 PANTHER CELL DIVISION PROTEIN KINASE 120 430 - -
Seca9g03130 638 SUPERFAMILY Protein kinase-like (PK-like) 115 432 IPR011009 -
Seca9g03130 638 MobiDBLite consensus disorder prediction 565 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03130 Seca-Chr9 44805073 44809676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03130 114 463 Core Cell Cycle Gene Families AT5G10270 49.863 2.72e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca9g03130 Pkinase 3.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03130 K08819 - gmx:100791743 879.396