Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03122 ATGGAATCTATGTTTCAAGAAGAAGGGTCCTCTTCTGTAACTTCTTCACCTCTACAATTCTTCTCCATGATGTCACTTTCACCTAGCATAGGATCTCCTTACCCATGGCTTAGAGAACTCAAATCAGAGGAAAGGGGTTTGTACTTGATCCATTTGTTGCTCACTTGTGCAAACCATGTTGCTGCTGGTAGTCTTGAAAATGCAAATGTCACACTTGAGCAAATTTCCCAGCTTGCTTCCCCTGATGGTGATACCATGCAGAGAATTGCTGCATACTTTACTGAAGCACTTGCTGATAGGATACTCAAAACGTGGCCTGGCCTTCACAGGGCCCTCAATTCCACCAGAATAGTTATGGTTTCTGAAGAAATTCTTGTCCAGAAGCTCTTCTTTGAGCTTTTTCCTTTCTTGAAGGTAGCATATATTCTGACAAATCAGGCTATTGTTGAAGCAATGGAAGGGGAGAAAATGGTACATATAATTGATCTCAATGCTGCTGAACCTGCTCAGTGGATTGCTCTCCTCCAAGTTTTGAGTGCACGTCCTGAAGGCACTCCTCATTTGAGAATCACTGGGGTACATCACCAGAAAGAGATTCTGGATCAGATGGCTCACAAGCTTACTGAAGAAGCAGAAAGGTTGGATATCCCATTCCAATTCAATCCTGTAGTTAGCAAGTTAGAAAATCTTGATTTTGACAAACTTCGTGTAAAAACTGGTGAGGCACTTGCAATAAGTTCTATTCTGCAATTACATTCCCTTTTGGCCTTGGATGATGAAGCCTTGCGGAGAAAATCTCCTCTTTTGTCAAAACATTCAAATGGAATTCACCTGCAAAAAGCCCTGCTAATGAACCAAAGCACATTGGGTGATTTGCTTGAAAAAGACATGGTTAATGGATATAGCCCAAGTCCTGACTCAGCCTCATCTTCACCAGCATCTTCAACTGCTTCAATGAATTCAGAGAGCTTTCTTAATGCCTTATGGGGATTATCACCAAAGGTCATGGTTGTAACAGAACAAGACTCCAATCATAATGGTTCCACTCTGATGGAGAGGCTGCTGGAAGCACTATATTCTTATGCAGCATTGTTTGATTGTTTGGAATCCACTGTCTCAAGAACATCATTGGAGAGATTAAAGGTGGAGAAGATGCTTTTTGGTGAGGAAATCAAGAACATTATTGCATGTGAGGGAGCTGAAAGAAAGGAAAGACATGAAAAGCTGGATAAGTGGATTCAAAGACTTGATTTATCTGGGTTTGGAAATGTGCCTTTAAGCTATTATGGTATGTTGCAGGCAAGGAGGTTCCTGCAGAGCTATGGTTGTGAGGGATATAGGATGAGGGAAGAAAATGGCTGTGTAGTAATTTGCTGGCAGGATCGGTCCTTGTTTTCAACAACGGCTTGGAGACCTAAGAAGTGA 1425 0.4182 MESMFQEEGSSSVTSSPLQFFSMMSLSPSIGSPYPWLRELKSEERGLYLIHLLLTCANHVAAGSLENANVTLEQISQLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRIVMVSEEILVQKLFFELFPFLKVAYILTNQAIVEAMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGTPHLRITGVHHQKEILDQMAHKLTEEAERLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDEALRRKSPLLSKHSNGIHLQKALLMNQSTLGDLLEKDMVNGYSPSPDSASSSPASSTASMNSESFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWIQRLDLSGFGNVPLSYYGMLQARRFLQSYGCEGYRMREENGCVVICWQDRSLFSTTAWRPKK. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03122 474 ProSiteProfiles GRAS family profile. 40 471 IPR005202 -
Seca9g03122 474 Pfam GRAS domain family 49 471 IPR005202 -
Seca9g03122 474 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 467 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03122 Seca-Chr9 44706461 44708963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03122 1 474 GRAS Transcription Factor Family AT1G50420 69.215 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca9g03122 GRAS 5.6e-140 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03122 - - cave:132164091 796.578