Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03092 ATGTCGCGCAAAGTTAATTTTGCTGGTGAAATAGATCGAACCAAAGAATCATGGAAGTTGGCTGTTAGAATGACCAATGTTTGGCGTTCAGAAAATTACATGGATGTGATTTTCATGGATGAGAAGGGAGGAAAAATACATGCATCATTGAATGAATCAGATTTGCGGAAATTAAATGTTGTCATAGAAGAAGGTAACACTTACAGTATTAAAAATTTGGAAGTCAAAGAGAATACTGGTAGGTATAAGTTATGCAACCACCTATACAAGGTTGGATTCATGAAAGGAACCAATGTGCGACAATTTGATTTCCCTCAAATTCCTCTAAATGTATTCCAATTTACAAGCTTTGAGGATATAATCAAAGGACATGCTTCCACTGATGTGTTAATAGATGTAATTGGAGAGTTCATTGACATTCAACAACATATCGATGAAAGCATACCCAAGAAATTGGTTGTGGTCATGAAGGATCAAAGTGGCCACACTATATGCTGGACTTTGTGGGAGGAGTATGCAAGTCGGGTTTTATCTTTTCTAGGAACACATGAAGTCTTGGCACTAAATAAGAGCGTTATCATCTCATTAGGAAACTTCCCAGTTACTCTTCAAAATACAAAGGTTCACTCAAGGCTATACATCAATGAAGACATTGATGAGATCAATAAATTCAAAAGCAGTCAAAAACTGAGTCAGTTATCTTCGTCAAGTCATGTTACCCAGGGAGAAACATTTGTTCAAGATGCAAATGTCATGAGTTTAGCTAAAATCAATGAGACCCAAGAGGAAAAAATTTGTCTCACTGTTGGGAAAATAGAGATGATATATGTTAGCAATGGTTGGCAGTATGATGCATGTGTTAAGTGTAGCAAGAAACTGGAGTCTGAAACTGAGCCATTTATATGTGCAAGGTGTGGAAAGCTAAACTCTGAACGAGTTCCTAGGTTCAGATTAGAGGTAAAAGTTTCTGACAAGAATGTGCATTCAAAGTTCGTACTATGGGATAAGCATTGTGTCCAACTATTGAACCAGAGTGCTCTGGATCTTAAGAAGCAAATGATCCAGGAGGAAGGAGTCTTTGATCCAATGGAACTCCCTGGACCCATAGATTCTATTCTAGGCAAGGTTCTACCTTTCAAGATTAAGATCAAACTAAAGTACAAAGGTTATTCTGTTCACCAAATCTCTGAAGATCCACAAATTATTGAATCAATCATTGGGTCAATTAAAAACTTTGAGGGTGCTGGGAAGAATGATAAAGGCAAAACAATCTGCTCAGGTGCTAATGAAGTTGATTACATGGACAGTCAATCTTTGTCTGCAACTTCTGAGTTCGACCCTGCATCTTTGGAATGTTTAACTCCTGCCAAGCGTATTTCCCTTGAGGATCTATCATCTCAAGCTCTGAATGAGGGACAATTTTCTTGCACCAAGATGATGAAGAATATTAAATCTGAGTGA 1461 0.3758 MSRKVNFAGEIDRTKESWKLAVRMTNVWRSENYMDVIFMDEKGGKIHASLNESDLRKLNVVIEEGNTYSIKNLEVKENTGRYKLCNHLYKVGFMKGTNVRQFDFPQIPLNVFQFTSFEDIIKGHASTDVLIDVIGEFIDIQQHIDESIPKKLVVVMKDQSGHTICWTLWEEYASRVLSFLGTHEVLALNKSVIISLGNFPVTLQNTKVHSRLYINEDIDEINKFKSSQKLSQLSSSSHVTQGETFVQDANVMSLAKINETQEEKICLTVGKIEMIYVSNGWQYDACVKCSKKLESETEPFICARCGKLNSERVPRFRLEVKVSDKNVHSKFVLWDKHCVQLLNQSALDLKKQMIQEEGVFDPMELPGPIDSILGKVLPFKIKIKLKYKGYSVHQISEDPQIIESIIGSIKNFEGAGKNDKGKTICSGANEVDYMDSQSLSATSEFDPASLECLTPAKRISLEDLSSQALNEGQFSCTKMMKNIKSE. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03092 486 Gene3D - 106 233 IPR012340 -
Seca9g03092 486 PANTHER OS03G0429900 PROTEIN 12 456 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca9g03092 486 SUPERFAMILY Nucleic acid-binding proteins 16 100 IPR012340 -
Seca9g03092 486 Gene3D - 234 412 IPR012340 -
Seca9g03092 486 SUPERFAMILY Nucleic acid-binding proteins 112 230 IPR012340 -
Seca9g03092 486 SUPERFAMILY Nucleic acid-binding proteins 257 389 IPR012340 -
Seca9g03092 486 Gene3D - 8 101 IPR012340 -
Seca9g03092 486 CDD RPA1_DBD_A_like 19 99 - -
Seca9g03092 486 Pfam Domain of unknown function DUF223 36 130 IPR003871 -
Seca9g03092 486 Pfam Replication factor-A C terminal domain 270 384 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03092 Seca-Chr9 44469883 44472785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03092 1 358 Core DNA Replication Machinery Family AT5G08020 24.365 2.14e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03092 - - lang:109343677 253.062