Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03091 ATGGAAAATGACACAAGTTGGGAGCAGAAGGCACTCATCAATGAGCTAACTCAGGGGATGGAGACAGCAAGAAAGTTGAAGGCAGACTTGACGTTACCCTCTTCAGTTGACACAAGGGACTTGCTGGTGCAGAAGATATTATCTTCTTATGACAAGGCTTTACTAATTCTAAGATGGAATGCTTCAATTTCCATGTCAACTAAAACTTCCTCACCAGAGTCCCCAGTATCCTTCAACAGAGGGGGCCTCAAGAATCATCAGAAGGCTAAACAAGACTCAAAGAAAAGAAAGATGATGCCCAAATGGATGGATCAAGTTAAAGTGAAGATAGAGAATGGCATTGAAGGACCCTACGAAGATGGCTACAGCTGGAGAAAATATGGACAGAAAGATATTCTGGGTGCAAAATATCCAAGAAACTATTATAGATGCACCTTCCGGAACACAAAGGGCTGCATGGCTACGAAGCAGTTACAGAGATCAGATAAAGATCCCACTATCTTGGACATAACTTACAGAGGAAGCCACACCTGTTCTCAAAGAAACGATGCCGTTCTGCCGCCAAAGTCACCAGAACCGCAAGAGAAAGCGCATGGACAAGAAAGCCTTACAAAGTTGAAAAACACTTTGACTGTCAATACGGAAAACTTGGAAAATGAAGAAACGGCATATCCTTTCACTTCATTAGAATGCATGACACAAGATAACCACACTTTATTTCCTTCTATGCTGCAGGAGAATGATGATCCCTTTTTGAGTAGCATTTCCCAAACGCACTTGTTATCTCCAGAAACACCAGAATCTAAATATTATCTATCTCTGGATGAGTTGGATGGTGTCCCTACAAAGCCAGGCCCAGCAGGTTCTGACATCATTTCCGCCGACACATTGGCCGCCAATTCTCCAATTTTCGATTTTAATTTCTCACTCGATTCAGTGAACATTGATCCAAATTTCCCTTTCAATACCTCGGGATTTTTGTCCTAA 987 0.4215 MENDTSWEQKALINELTQGMETARKLKADLTLPSSVDTRDLLVQKILSSYDKALLILRWNASISMSTKTSSPESPVSFNRGGLKNHQKAKQDSKKRKMMPKWMDQVKVKIENGIEGPYEDGYSWRKYGQKDILGAKYPRNYYRCTFRNTKGCMATKQLQRSDKDPTILDITYRGSHTCSQRNDAVLPPKSPEPQEKAHGQESLTKLKNTLTVNTENLENEETAYPFTSLECMTQDNHTLFPSMLQENDDPFLSSISQTHLLSPETPESKYYLSLDELDGVPTKPGPAGSDIISADTLAANSPIFDFNFSLDSVNIDPNFPFNTSGFLS. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03091 328 SUPERFAMILY WRKY DNA-binding domain 117 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g03091 328 SMART WRKY_cls 118 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g03091 328 MobiDBLite consensus disorder prediction 179 201 - -
Seca9g03091 328 Gene3D WRKY domain 104 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g03091 328 Pfam WRKY DNA -binding domain 119 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g03091 328 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 238 IPR044810 GO:0003700
Seca9g03091 328 ProSiteProfiles WRKY domain profile. 119 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g03091 328 FunFam WRKY transcription factor 53 104 181 - -
Seca9g03091 328 MobiDBLite consensus disorder prediction 68 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03091 Seca-Chr9 44450185 44451445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03091 6 226 WRKY Transcription Factor Family AT4G23810 40.226 2.34e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca9g03091 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03091 - - gmx:100815760 399.438