Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03081 ATGACGAAGAAATACACTCACCACATCCTCAACCACACCAAACACGATAACCATCCATTTCCCAGAGTGGTGAGGATAACCGTCACAGACACCTACGCTACCGACTCCTCCAGCGACGAAGAAGAAGAAGAAAAAACCTTCCCCTCTTCCACGCGTCAACGCCATAAAAAGTTCGTCAACGAGATTATCATTGAGAATAATGACGGCGTCGTTTCGAGGAAGAGGAGCAGGAACAAGTCCGGCACCGCCGGAAGAGCAGCCAGAGCTCCGGCGAGTCAGCCTGTTTCCTCCGGCAAGAAATTCCGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCGGCAGAGATAAGAGACCCGTCACGACGCGTACGGGTTTGGTTGGGTACCTTCGACACTGCAGAAGAAGCTGCCATGGTGTACGACAACGCAGCCATTAAGATGCGTGGACCTGACGCGCTCACTAATTTCATAACGCCACCTGCCACGTGGCAGTGCTCGCCGGAGAATGAAAAGCCGGCACCGAACTGCGGTTACAACTCCGGGGAAGAATCTCAAAGCAAGAATTTGTTTTCTCCAACTTCCGTGCTTTCATTATCCGAAGAAGCTGAATCTGTCGCTGGCAAAGACGACGAATGCTCGTGTGTGTCGGAGAATTTGTGTGAAAAGATTATGACACCACCAACTGTTGAAAAGGGTGAATCTGAGTCACTGTTTCCAATTCCTAGCGATATACTATTTGAGTTCCAAGGTTCCCCGTCAGCACAGGACGTTTTTGACAACACACTGCCAGAGAGCATTTTCTACGGCGATGGTGTCTTTCTCACTTCTTCTGAGGATTTGGATTTCAGTTTCAATAGTTGGCATACTAATAGAGATCGTGACTTTTTCCAAGATATAGACGATTTATTTGTTTCAGATCCGCTTCTTGCTCTTTGA 936 0.4893 MTKKYTHHILNHTKHDNHPFPRVVRITVTDTYATDSSSDEEEEEKTFPSSTRQRHKKFVNEIIIENNDGVVSRKRSRNKSGTAGRAARAPASQPVSSGKKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAMVYDNAAIKMRGPDALTNFITPPATWQCSPENEKPAPNCGYNSGEESQSKNLFSPTSVLSLSEEAESVAGKDDECSCVSENLCEKIMTPPTVEKGESESLFPIPSDILFEFQGSPSAQDVFDNTLPESIFYGDGVFLTSSEDLDFSFNSWHTNRDRDFFQDIDDLFVSDPLLAL. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03081 311 Gene3D AP2/ERF domain 99 158 IPR036955 GO:0003700|GO:0006355
Seca9g03081 311 FunFam Ethylene-responsive transcription factor 2 99 158 - -
Seca9g03081 311 CDD AP2 99 156 IPR001471 GO:0003700|GO:0006355
Seca9g03081 311 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Seca9g03081 311 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 221 - -
Seca9g03081 311 MobiDBLite consensus disorder prediction 69 104 - -
Seca9g03081 311 SUPERFAMILY DNA-binding domain 100 156 IPR016177 GO:0003677
Seca9g03081 311 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Seca9g03081 311 MobiDBLite consensus disorder prediction 32 53 - -
Seca9g03081 311 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Seca9g03081 311 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Seca9g03081 311 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03081 Seca-Chr9 44346232 44347167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03081 20 311 AP2-EREBP Transcription Factor Family AT4G11140 43.478 1.43e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g03081 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03081 - - lja:Lj2g3v2087840.1 308.145