Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03069 ATGGGTAACTGCAGCAGCGAACCCTCTGCCGAAACCCAACCGAATTCGGACGCCACACCCTCCAATGGCATCTCCGATCGGAAACCCAACCCACCACCCTCCTCAGTGGGCCGCGTCCTGGGCCGACCCATGGAGGACGTTCGCTCCACCTACATCTTCGGCCGCGAACTAGGCCGCGGTCAGTTCGGAGTGACATACCTTGTGACTCACAAAGTCACCAAGGAGCAGTTTGCCTGCAAATCCATCGCCACGCGCAAGCTCGTTCACCGCGATGACTTGGAAGACATTCGCCGCGAGGTTCAGATCATGCACCACCTCACCGGTCACCTCAACATCGTTGAGCTCAAAGCTGCTTACGAGGATCGCCACTCCGTCAACCTCATCATGGAACTCTGCGCCGGCGGCGAGCTCTTCGACAGGATCATATCCAAAGGCCATTACTCCGAGCGTGCCGCCGCCAACTTGTGTCGCCAGATCGTCACTGTGGTCCACAATTGTCACACCATGGGAGTGATGCATAGGGATTTGAAGCCCGAGAATTTCTTGTTCCTTAGCAAGGACGAGAATTCGCCTCTAAAGGCCACGGATTTCGGCCTCTCCGTGTTTTTCAAGCCTGGAGATGTATTTAAAGATCTTGTTGGGAGTGCCTATTATGTTGCTCCTGAAGTGCTGCGTAGAAGTTATGGACCCGAAGCTGATATTTGGAGTGCCGGTGTTATACTCTACATTCTGCTCTCTGGTGTCCCACCCTTCTGGGCAGAGAAAGAGCAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTCGCATCAGATCCTTGGCCTTCCATATCTAGCAGTGCCAAAGACCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAACGACTTTCAGCAGTTGAAGTCCTTGATCATCCTTGGATGAAAGAAGATGGAGCATCTGATAAGCCTCTTGATATTGCTGTTTTAACCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATTGCTGAGAATCTTTCTGAAGAAGAGATCATTGGCTTGAAGGAAATGTTCAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCCAAACTGGGTACTAAAATTTCCGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTAGACGGAAATGGAGCCATTGATTATATTGAATTTATAACAGCTACCATGCACATGAATAGAATGGAAAGAGAGGACCACCTATATAAAGCTTTTGAATATTTTGACAAGGATAAAAGCGGGTACATCACAATGGAAGAGTTGGAATCTGCCCTTAAAAAGTATAACATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACTTGGTAACCAACAGACGTCGCAAATAA 1506 0.4761 MGNCSSEPSAETQPNSDATPSNGISDRKPNPPPSSVGRVLGRPMEDVRSTYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLVHRDDLEDIRREVQIMHHLTGHLNIVELKAAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAAANLCRQIVTVVHNCHTMGVMHRDLKPENFLFLSKDENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAEKEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRADPKERLSAVEVLDHPWMKEDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEVRQLMEAADVDGNGAIDYIEFITATMHMNRMEREDHLYKAFEYFDKDKSGYITMEELESALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDLVTNRRRK. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03069 501 SMART efh_1 391 419 IPR002048 GO:0005509
Seca9g03069 501 SMART efh_1 462 490 IPR002048 GO:0005509
Seca9g03069 501 SMART efh_1 355 383 IPR002048 GO:0005509
Seca9g03069 501 SMART efh_1 427 455 IPR002048 GO:0005509
Seca9g03069 501 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Seca9g03069 501 Gene3D - 317 491 - -
Seca9g03069 501 Pfam Protein kinase domain 53 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03069 501 SUPERFAMILY EF-hand 347 488 IPR011992 -
Seca9g03069 501 Gene3D Transferase(Phosphotransferase) domain 1 137 316 - -
Seca9g03069 501 Gene3D Phosphorylase Kinase; domain 1 53 136 - -
Seca9g03069 501 SUPERFAMILY Protein kinase-like (PK-like) 48 319 IPR011009 -
Seca9g03069 501 Pfam EF-hand domain pair 356 416 IPR002048 GO:0005509
Seca9g03069 501 Pfam EF-hand domain pair 426 488 IPR002048 GO:0005509
Seca9g03069 501 MobiDBLite consensus disorder prediction 1 41 - -
Seca9g03069 501 CDD STKc_CAMK 51 308 - -
Seca9g03069 501 FunFam Calcium-dependent protein kinase 1 53 136 - -
Seca9g03069 501 ProSitePatterns EF-hand calcium-binding domain. 400 412 IPR018247 -
Seca9g03069 501 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
Seca9g03069 501 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Seca9g03069 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Seca9g03069 501 MobiDBLite consensus disorder prediction 1 29 - -
Seca9g03069 501 FunFam Calcium-dependent protein kinase 1 316 491 - -
Seca9g03069 501 ProSitePatterns EF-hand calcium-binding domain. 364 376 IPR018247 -
Seca9g03069 501 ProSiteProfiles Protein kinase domain profile. 51 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03069 501 ProSiteProfiles EF-hand calcium-binding domain profile. 387 422 IPR002048 GO:0005509
Seca9g03069 501 ProSiteProfiles EF-hand calcium-binding domain profile. 459 493 IPR002048 GO:0005509
Seca9g03069 501 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Seca9g03069 501 PANTHER SERINE/THREONINE-PROTEIN KINASE 48 483 - -
Seca9g03069 501 ProSiteProfiles EF-hand calcium-binding domain profile. 351 386 IPR002048 GO:0005509
Seca9g03069 501 SMART serkin_6 51 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03069 501 FunFam calcium-dependent protein kinase 1 137 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03069 Seca-Chr9 44206171 44210612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03069 37 500 EF-hand Containing Proteins AT4G23650 82.366 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca9g03069 Pkinase 1.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03069 K13412 - gmx:100817321 927.546