Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03053 ATGGCGAGGGAGCTGGAGAAGAAAGCCAAAGAAGCATTCATCGACGACGACTTTGCTCTCGCCGTTGATCTCTACACTCAAGCCATCCACTTGGATCCTAACAACGCTAACCTCTTCGCCGATAGAGCCCAAGCCCATATTAAGCTCAACGCTTTCACCGAAGCGGTTTCCGATGCTAACAAAGCTATCCAACTAAACCCTTCATTATCAAAGGCCTATCTTCGTAAAGGGACCGCTTGTATAAAGCTCGAAGAATATCATACTGCCAAGGTAGCACTGCAAAACGGTGCCTCTTTTGCTCAAGATGATTCAAGATTCACCAATTTGATTCAGGAATGTGATCGCTATATTGCAGAGGAATCAAATGGTCTCACTAGCACCTTATCACCAAATGGGCCCAAAACATCTGCACCATCTGGTGATAATCCCCATTCAAGTGATGGAAGTGATGGAACGACTAAAGAAGCTGAAAGAGATTTGGTATCACGAATCAATGAAGTTGCATTAATCAGACCAAAATATAGACATGAATACTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATACCAGAGAAAAATGTGGTCGTTGACTTTGGTGAACAAATTCTGAGTGTTACTATTGATGTTCCTGGTCAAGATGCCTATCATTATCAACCTCGACTGTTTGGAAAGATAATACCTGATAAATGCAGAGTTGTGGTGCTGTCAACCAAAATTGAAATACGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATGGCAAGGATATTCTTCCCCAAAAAATAAAAATGACTACAAGTGAGCTGACTGATTATGTAGTTTATTCTTTGTGA 858 0.4114 MARELEKKAKEAFIDDDFALAVDLYTQAIHLDPNNANLFADRAQAHIKLNAFTEAVSDANKAIQLNPSLSKAYLRKGTACIKLEEYHTAKVALQNGASFAQDDSRFTNLIQECDRYIAEESNGLTSTLSPNGPKTSAPSGDNPHSSDGSDGTTKEAERDLVSRINEVALIRPKYRHEYYQKPEEVVVTIFAKGIPEKNVVVDFGEQILSVTIDVPGQDAYHYQPRLFGKIIPDKCRVVVLSTKIEIRLAKAEAINWTSLEYGKDILPQKIKMTTSELTDYVVYSL. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03053 285 MobiDBLite consensus disorder prediction 123 157 - -
Seca9g03053 285 FunFam Protein SGT1 homolog 1 127 - -
Seca9g03053 285 MobiDBLite consensus disorder prediction 123 147 - -
Seca9g03053 285 ProSiteProfiles CS domain profile. 171 260 IPR007052 -
Seca9g03053 285 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Seca9g03053 285 Pfam CS domain 175 250 IPR007052 -
Seca9g03053 285 SUPERFAMILY HSP20-like chaperones 172 267 IPR008978 -
Seca9g03053 285 CDD p23_CS_SGT1_like 177 260 - -
Seca9g03053 285 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Seca9g03053 285 Pfam Tetratricopeptide repeat 15 56 - -
Seca9g03053 285 SMART tpr_5 2 35 IPR019734 GO:0005515
Seca9g03053 285 SMART tpr_5 36 69 IPR019734 GO:0005515
Seca9g03053 285 SMART tpr_5 70 103 IPR019734 GO:0005515
Seca9g03053 285 PANTHER PROTEIN SGT1 HOMOLOG 1 274 IPR044563 GO:0051087
Seca9g03053 285 Gene3D - 172 263 IPR008978 -
Seca9g03053 285 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Seca9g03053 285 FunFam Protein SGT1 homolog A 172 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03053 Seca-Chr9 44007994 44012893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03053 1 112 U-box Gene Family AT3G07370 29.464 1.77e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03053 K12795 - gmx:100784022 432.18