Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03044 ATGGGTAGCAAAAGCAAAGAGAAAGAGGAAAATCAAATAAAGAGGGTTTTGACTCATGGAGGAAGATACGTGCAATACAATGTTTACGGAACCTTGTTCGAGGTCTCTTCCAAATACGTTCCTCCCATTCGCCCTATCGGTAGAGGCGCTTATGGCTTCGTCTGTTCTGCTGTTAATTCAGATACGCACGAAGAAGTTGCCATCAAGAAGATTGGTAACGCATTTGACAACATTATTGATGCTAAAAGGACTCTTAGGGAAATTAAACTGCTTCGCCACTTGGACCATGAAAATATTATTGCCATTAAAGATATAATACGACCTCCCAGAAAGGATGCCTTTAATGATGTTTACATTGTTTATGAATTGATGGACACTGATCTTCATCAGATAATTCGTTCTGACCAGCCTCTCAATGATGACCATTGTCAGTACTTTTTATACCAGCTGTTACGGGGGTTAAAATATGTGCATTCAGCTAATATCTTGCACCGTGATCTTAAGCCCAGTAATTTACTCCTGAATGGCAATTGCGACCTTAAAATTGGGGACTTTGGTTTGGCAAGGACGACATCTGAAACGGATTTCATGACGGAGTATGTTGTCACCCGATGGTACCGAGCCCCTGAATTGCTCCTTAATTGTTCAGAGTACACCTCTGCAATTGATGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGGAAAGATTATGTTCATCAGCTAAGGCTTATAACAGAGTTAATAGGTTCACCTGATGACGCCAGCCTAGGATTTCTCCGAAGTGAAAATGCCCGAAGATATGTTAGACAGACTCCACAATACAGGAAGCAAAAATTCTCAGCAAGATTCCCTAATATGTCGCCTGAGGCTTTGGATCTACTAGAAAAGATGCTTATCTTTGATCCCAACAAACGTATTACAGTTGATGAGGCCCTATGTCACCCATATCTTTCATCTCTTCATGACATCAATGATGAGCCAGTTGGTCCCAGGCCATTCAGTTTTGATTTTGAGCAGCCAACATGCACTGAAGAGCACATCAAGGAGCTCATCTGGAGGGAATCAGTGAAGTTCAATCCAGATCCTCCCTGTCAGTGA 1125 0.4187 MGSKSKEKEENQIKRVLTHGGRYVQYNVYGTLFEVSSKYVPPIRPIGRGAYGFVCSAVNSDTHEEVAIKKIGNAFDNIIDAKRTLREIKLLRHLDHENIIAIKDIIRPPRKDAFNDVYIVYELMDTDLHQIIRSDQPLNDDHCQYFLYQLLRGLKYVHSANILHRDLKPSNLLLNGNCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCIFGEIMTREPLFPGKDYVHQLRLITELIGSPDDASLGFLRSENARRYVRQTPQYRKQKFSARFPNMSPEALDLLEKMLIFDPNKRITVDEALCHPYLSSLHDINDEPVGPRPFSFDFEQPTCTEEHIKELIWRESVKFNPDPPCQ. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03044 374 SUPERFAMILY Protein kinase-like (PK-like) 43 334 IPR011009 -
Seca9g03044 374 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 38 327 - -
Seca9g03044 374 FunFam Mitogen-activated protein kinase 124 353 - -
Seca9g03044 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Seca9g03044 374 FunFam Mitogen-activated protein kinase 25 134 - -
Seca9g03044 374 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Seca9g03044 374 ProSitePatterns MAP kinase signature. 75 178 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca9g03044 374 Gene3D Phosphorylase Kinase; domain 1 23 363 - -
Seca9g03044 374 Pfam Protein kinase domain 44 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03044 374 ProSiteProfiles Protein kinase domain profile. 40 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03044 374 SMART serkin_6 40 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03044 374 Gene3D Transferase(Phosphotransferase) domain 1 124 353 - -
Seca9g03044 374 CDD STKc_TEY_MAPK 33 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03044 Seca-Chr9 43941671 43945331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03044 9 369 MAP Kinase Gene Family AT4G01370 83.380 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca9g03044 Pkinase 1.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03044 - - gmx:100803024 719.153