Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03039 ATGCAGACTCATCTATCGAACCAGATCCAAGGCTTTGTGTCGGAGGCAGAGATGTTCAACCTCAGCGGCACAGGCATGGAAATGATAGGGTTTCCCAAGCAACAACAGAGTGAATGGAAAAGTTTCTTCTCCAAACCTGGTCCTACTTCTTCCAACACCATGAACGAGTCTTGTGGTAATTTCTTCCAGCATCCGCATGAATACCCAAACACAACAGGGATTTCTGAAACAGGTAGCCAGAATCTGATTGTTGGTGATTCCTCAGCAGCATGGCAGGGGGAGAACAGATCATTGGTGGTGGAAGATTCTTCTTTAAGGTGTGTGTTCCCTTGTGAAGGAAATGAAAGGCCAAGTCAAGGCCTTTCACTCTCTCTTAGTTCAAACAATATTGGGTTGCAATCTTTTGAGCTAAGACATCATCAACCCCAACCTGATTTTGCCTCATCCTGTGCCAGAGATGGGAAATCATCAACAAATGCTCAACAGCAACAACAACAACAGATGATGTTGGAAGATGTGTATTTGAGCGCCAAAGCAGCTGCAAATCTTTATCATTCAGGACATTACTTGCTCACAAACTCCAAGTACTTGGTACCTACACAGGAACTTTTGAACGAGTTTTGTAGTCTAGACTCAAAGCAAAGTGATGATGTAGCAAAGCAAAAGTTGGAGAAGAAGAAGCAGTTGGAAATAGAGGATACCTCAAAGAAGCATTCTCTCACCTCTCTAGAGTTGGCTGAATTGCACAAGAGAAAGATAAAGCTGCTTTCCATGCTGGAAGAGGTTGAGAGAAGATATAAGCACTACCGTAATCAGATGAAGGCGGTGGTGTCTTCATTTGAAGCAGTGGCTGGGAATGGGGCTGCCACAGTGTATTCAGCGTTGGCCTTGAAAGCCATGTCGAGACATTTCAGGTGTTTGAAGGATGGGATTATGGGACAGATTGAGGTGACAAGGAAAGGCATGGGAGAGAGAGAAGCAGTTGCAGTTGGAAGAAGCAGGGGGGAAACGCCGAGGCTGAAAATAATAGACCAAGCATTGAGACAACAAAGGGCGTTTCAGCAAATGAACATGACGGAAACCCATCCATGGAGACCCCAGCGTGGCCTTCCCGACCGTTCTGTCTCCGTTCTAAGGGCTTGGCTTTTTGACCATTTTCTCAATCCAACCAACCTTTGCAGGTACCCAAGCGATGTTGATAAACATATTTTAGCACGCCAGACTGGTCTCTCCAGAAGTCAGGTTTCGAATTGGTTTATTAACGCGAGGGTGAGGCTATGGAAGCCAATGGTGGAGGATATGTACTTGGAGGAAGTGAAGGAACAAGAAAACAATATTAATAAAAATATTGAAGCAGCAGCTGCTTGTGAGGATGATCAGAAGCCAAATATTGATTCGGATCAGTGTGCATCCTCCAATATCATCAACAACCAACAACAACATATCAATGATTTTTACACAAGTAGTGGGGGTAGAGTGTCTTTGACGCTGGGGTTAAAACAAGCGCCACCAAGTCAGAGTTCAGTTTTGTATCCAATTGTAAGAGACCAAATTGAAGATTGCAGTCAAGCAGGTGTTGTTCAGTACTCTCTTTTGGATCCATACAGGAATTTGATGGACGCACAGATGCTCCATCACCTCCCGGGTTAG 1650 0.4467 MQTHLSNQIQGFVSEAEMFNLSGTGMEMIGFPKQQQSEWKSFFSKPGPTSSNTMNESCGNFFQHPHEYPNTTGISETGSQNLIVGDSSAAWQGENRSLVVEDSSLRCVFPCEGNERPSQGLSLSLSSNNIGLQSFELRHHQPQPDFASSCARDGKSSTNAQQQQQQQMMLEDVYLSAKAAANLYHSGHYLLTNSKYLVPTQELLNEFCSLDSKQSDDVAKQKLEKKKQLEIEDTSKKHSLTSLELAELHKRKIKLLSMLEEVERRYKHYRNQMKAVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGIMGQIEVTRKGMGEREAVAVGRSRGETPRLKIIDQALRQQRAFQQMNMTETHPWRPQRGLPDRSVSVLRAWLFDHFLNPTNLCRYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEDMYLEEVKEQENNINKNIEAAAACEDDQKPNIDSDQCASSNIINNQQQHINDFYTSSGGRVSLTLGLKQAPPSQSSVLYPIVRDQIEDCSQAGVVQYSLLDPYRNLMDAQMLHHLPG. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03039 549 Pfam Homeobox KN domain 381 425 IPR008422 GO:0003677|GO:0006355
Seca9g03039 549 CDD homeodomain 364 430 IPR001356 GO:0003677
Seca9g03039 549 Gene3D - 367 434 - -
Seca9g03039 549 ProSiteProfiles 'Homeobox' domain profile. 382 429 IPR001356 GO:0003677
Seca9g03039 549 Coils Coil 245 279 - -
Seca9g03039 549 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 152 457 - -
Seca9g03039 549 MobiDBLite consensus disorder prediction 143 162 - -
Seca9g03039 549 SUPERFAMILY Homeodomain-like 365 435 IPR009057 -
Seca9g03039 549 SMART prehox3 185 313 IPR006563 -
Seca9g03039 549 SMART HOX_1 364 433 IPR001356 GO:0003677
Seca9g03039 549 Pfam Associated with HOX 191 311 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03039 Seca-Chr9 43895511 43898911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03039 93 547 Homeobox Transcription Factor Family AT5G41410 43.956 3.15e-113 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca9g03039 POX 4.9e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03039 - - gmx:100800542 580.482