Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03029 ATGGGATTTCCAGTGGGGTATACAGAGCTTATGTTGCCAAAGGTGTTTGTGCAGCTGCTTTCCTTATTGGGTTTCATCAGGAAATTGGTGACCATCCTCTTGTGCTATTTGGGTCTGGAACCCGACGACATTGCCTGGCCGGAGAGGATGCCGGAATTCGAATCGGTGTCAGCTCTTCTGATGGGGGAAATCCTGCCGGTGGTGAAGTTCTCGGAGGTGGAGATGGTGGACCCTCCAGAGAGGTGCGCCGTGTGCCTGTACGACTTCGAGGCAGAGGACGAGATCAGAAGGCTCACAAACTGCCGCCACATATTCCACAGGGGATGTCTCGACCGTTGGATGGGATACGATCGGAGAACGTGCCCGTTGTGCCGGACACCCTTCATACCCCATCATATGCAAGATGCTTTCAATGACACGCTCTGGGAAGCTTCTGGAATCCCTGATTTTTATGATGATCATCCTAATTCTACCATCACGCCTTTCTAG 489 0.5215 MGFPVGYTELMLPKVFVQLLSLLGFIRKLVTILLCYLGLEPDDIAWPERMPEFESVSALLMGEILPVVKFSEVEMVDPPERCAVCLYDFEAEDEIRRLTNCRHIFHRGCLDRWMGYDRRTCPLCRTPFIPHHMQDAFNDTLWEASGIPDFYDDHPNSTITPF. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03029 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 130 IPR013083 -
Seca9g03029 162 Pfam Ring finger domain 81 125 IPR001841 -
Seca9g03029 162 SMART ring_2 82 124 IPR001841 -
Seca9g03029 162 SUPERFAMILY RING/U-box 81 131 - -
Seca9g03029 162 ProSiteProfiles Zinc finger RING-type profile. 82 125 IPR001841 -
Seca9g03029 162 PANTHER RING ZINC FINGER PROTEIN-RELATED 21 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03029 Seca-Chr9 43826529 43827017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03029 1 146 C3H Transcription Factor Family AT1G63840 58.065 4.44e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03029 K16281 - gmx:102665617 265.774