Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03027 ATGGGCGGTTGCTGTTGTTGTTCCTCCAAAGAGACTGAATTGACCGCTCCGCCTGCATACTACTATTACCCAAGAGTATCAGAGGAGCATGTCCCACTATCATCTCACCATGGTGCTGCTCCTGCTTTTTCTGGGGGGCTCTTAGTTGATACCAACCTAGACACTTCAAGTCCTGACACCTATAGACCGCCTCCTGCTCCTATCCCTTTCAATGTTACATCAGGTGTCACTCAAACTCCACCTGTGGTGCAAGAAATTTGTGTTGACAAAACTAATGCACCCCCACATACTACAAATTCTACTTCAATTCAAGAAACAGTTGCCGCTGACAATCATGGGGCCTCGGTTAAGTCAGAAGACTTGAAGGAATCAGAAAGTAAAGTTCAAACTGCTTTAGAACTTGACCCAGCAAAGGATCCTGAAATTGAACTTCCCAAGTTGGCTGAACCTATCATTTTAGTGGAAGAGGAGGATGCGTGCCCAATTTGTTTAGAAGAGTATGATGCAGAGAATCCAAAACTCTCCACAAAATGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGTCCTGTGTGTGATAAGGATATGGTTTTCAATCCTCCCATTGATTAA 636 0.4387 MGGCCCCSSKETELTAPPAYYYYPRVSEEHVPLSSHHGAAPAFSGGLLVDTNLDTSSPDTYRPPPAPIPFNVTSGVTQTPPVVQEICVDKTNAPPHTTNSTSIQETVAADNHGASVKSEDLKESESKVQTALELDPAKDPEIELPKLAEPIILVEEEDACPICLEEYDAENPKLSTKCDHHFHLACILEWMERSETCPVCDKDMVFNPPID. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03027 211 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Seca9g03027 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 206 IPR013083 -
Seca9g03027 211 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 39 207 - -
Seca9g03027 211 SMART ring_2 160 200 IPR001841 -
Seca9g03027 211 CDD RING-H2_AIRP1-like 156 204 - -
Seca9g03027 211 FunFam Putative E3 ubiquitin-protein ligase RHB1A 137 205 - -
Seca9g03027 211 SUPERFAMILY RING/U-box 152 207 - -
Seca9g03027 211 Pfam Ring finger domain 159 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03027 Seca-Chr9 43805988 43808676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03027 1 211 C3H Transcription Factor Family AT5G41350 54.167 3.46e-72 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03027 - - gmx:100816369 351.288