Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03021 ATGAGAAGCAGTCTTCCTGACCTTTTTGATGCACAGCCTGATCTGCTTTTTCAGCTTGTCACTATGTTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTACAGCATACTTCAGGAGCCTGGAAATTTTGTTATTACCTTCCCCAGATCTTATCATGGTGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCATATGGCGCATTTGGAGCTGATCTCTATCAGCGGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTGGCCCAGTATGGTGATGTTGATAGTAGAGCGTCTTCTTATTTGAAAAAGGAATTATTGAGAATATCAGATAAAGAAAAATCTCGGAGAGAGAAACTTTGGAAAAATGGTATCATTAAATCTTCTCGCTTAGCTCCTCGAAAATGTCCCCAATATGTTGGCACTGAAGAGGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCTGTTGTGTGCAGTTGCAGGCCATCATCTTTTGTGTGTTTGGAGCACTGGGAACACCTTTGTGAGTGTAAAAGTGTAAAACTCCGTCTTCTTTATCGTCATTCACTTGCAGAATTGTATGACTTGTCATTTTCTATGGACAAATATACTGCTGAGGACAAAGCTGAGTGTAGAAGTGTAAGAAGGCAGTCTTCATGTCTTGGTGCTTTGACAAAAAAGGTCATATATATGTATATTTTTGTGAAAGGTGGCCCCATTACTTTTGCTCAACTTGCTACAGAATGGCTTCTGCAGTCTAATACTATACTTCAAAACGTTTTTTTGACTGATGCATTTGTTACTGCACTAAAGAAAGCTGAACAATTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTAGGGATATGGTGAAGAATTTGATTGAAGCTAAGAAATGGGCAGAAGGGATAAGAGATTGTGTGACAAAAATTGAGTTATGGAAGTGTCATCAGGACTCGAGTGTAAAGAAAATTCATTTAGAATTTGTTGACGAGTTACTGAGATTTAACCCTGTACCATGCAATGAGCCTCATTATCATAAATTGAAGGAATATGCAGAAGAAGCAAGGTTGTTAAGTCAGGAGATTGGTGCTGCTTTGTCAATCTGTTCTGAGATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTACCCATCTACTTGAAAGAGAGTAAGGAATTAGAAGGGAAAATTTCTTCAACCAAGGCATGGCTGGATAGTGTTAGAAAATGCATCTCAGCGAGAGATCCTGCTGCATTAGAGGTTGATGTCCTCTACAAGTTAAAATCAGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGTGCTTCAGAATTTATTAAGTCAAACTGAATCTTGTAGTGCTCGATGTCGTGATATGTTACAAGGTCCAATGGATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACACCTTTACAGTTGATGTACCAGAGTTGAAGCTTCTACGGCATTATCATTCGGATGCTGTTTCATGGGTTTCCCACTTTCATGATGCTTTAGGGAGGGTTCACAAGCAGGAAGATCAACATAATGTAGTTGATGAATTGAAGAAAATTTTTGAAGAAGGTTTATCTTTGACAATTAAAGTTGATGAGTTGCCATTAGTTGAGATTGAGTTGAAGAAAGCTAATTGCCGAGAAAAAGCTTTAAAGGCACATGATTCAAAGATGCCTCTAGAATTCATTCAGCAACTATTGAAGGAGGCCGCTATGCTAGAAATTGAGGGAGAGAAACAGTTCATCTATTTATCTTCTGTGCTTGGTATTGCCATGCCTTGGGAGGAAAGGGCTAGAGAGATTCTTTCACACGGGGCTTCTATTTCTGACTTTGAGGACATGATCAGAGCTTCAGAAAACATATTTGTTATTCTTCCTTCACTTAATGATGTCAAAGAAGCATTATCAGAAGCTAATTCCTGGTTAAGGAGTTCAAAGCCATATTTAGTCTCTTCTACTTGTGCATCAAATTCTGTTTGGAAAGTCGAGGACTTACAGATTTTGGTTTCTCAATCAAAGCATCTTAAAATATCTTTAGAAGAAAGAGGGATGCTTGAATTAGTTTTGAATAACTGCAAAAAATGGGAGTATGAAGCATGTTCCCTAATAGATGATGCTCGATGCCTCTTTGAGTTGGATACCACTGTCCATGGAATAAGCAGCAGTTTAATGTCTAAGGTGGAAGATTTGGTTGCAAGAATCCAATCTACTATAACATCTGGTGTATCACTTGGTTTTGACTTCAGTGATATTCCAAAACTTCAAGCATCTTGTTCTACACTGCGATGGTGCAGAAGAGCCATATCTTTCTGCAATCATTCTCCTTCTTTAGAGGATGTTTTGGAGGTTGCGGACGGTCTCTCTCATTCCTTTGTTTCTGGTGCTCTGTTGAAAGTACTGGTTGATGGGGTTGAATGGCTTAGGAGAGCGTTAGAGGGGATTTCTGCACCTCGCCATTCTAGAAAATGCAAATTCACTGACGTTCAAGATATTCTTAATGATTATCAGACTATTAAAATGACCTTTGCAGCAGTGAAGTGTCATCTTGTAGAAGCCATTGGAAAACATAAGTTGTGGCAAGAGCAAGTGCATCAATTTTTTCGTCTAAGTTCTAGGGAACGAGCTTGGTCATCAATAGTGCAGCTCAAGGAACTCGGAGATACTGTTGCCTTTGGTTGCTCAGAACTAGATCTGATTTCATCTGAAGTTGAGAAGGTGGAAAATTGGAAAAAAAGATGCATGGATAACATAGGAACTTTAGTCCAAAATGAGAATTCACTGCTTCATGCACTGGAGAAGATAAAACAAACTCTAGATAGATCTTTGCTCATATATGGCATGTTGCAAGATCAGAATCAGAAGGAACAAAACCGATGCATCTGCTGCTTTATTGATTCTGAAGATCAGGAATTTCTTACTTGTACCACTTGTATGGACTGCTATCACTTGCGGTGCATTGGACTAACAGCAAAGGACACAGGCCTCGGAGACTATAAGTGCCGTTATTGTGAAATTGTGAAGGGCGAATCCCAATTTTCAGATGGAAGTGCCCTTCTGAGGTTTGAGAAGAAGCGTCTTGAATTGAACGTTCTTATTGAACTTCTATCCGATGCTGAACATTTCTGTTTATGGATTGATGAGAGAGATATTTTGAACCAACTTGTTGAGAAAGCCCTGGCTTGCAAATCTTGCTTGAGAGAAACAGTGAACCTTGCATCAGCTAATGTTGATGAAGATATTAGCATCATCTCTGAAAAACTGACTGTTGCTATAAAGGCTAGCAAAGTGGCTGGTGTCTATGATCAACATGATAATTGTGACCTTGAGCTGGCTTTAGCAAAAAACTTGTGGAAAATTCAAGTTGATAGATTGTTAAATGGTGTACAGAAGCCCGCTATCCAACAGATTCAGAAGCATCTGAAAGAGGGAGTGGCTATGGAGATATCACCTGAAGATCACTATATGCGGAAGCTTACAAATGTGAATTGCTTGACTTTGCAATGGGTGGAAATAGCCAAACAGGTAGCAATTGACTCTGGGGCACTTGGGTTAGATAAAGTTTTTGAACTTGTAGCGGAAGGTGAAAACTTGCCTGTTGATGTAAATGAGGAACTTAAGATGTTAAGAGCTCGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTCGATCCAAGAAGGATGATTGCTTGTTATCATTGTAATGAGTGGTATCACTATGATTGCATGAAATTACCATGCACACGAGAGGTCTACATTTGTCCTGCATGTAACCCGTGTACAGGATTGCCTACTAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCTAAAACCCCATCTCCCAGGCATACAAATCCTAGAAAGAAACAGAAGAGAGATGTGCCCAGTCTCAGTTGCGAGATGTTTGGAACCAGAAATCAAGATAGTAGTAATTATAGGTATTCGAGTGGGATAGAATGTCTAAGGTGGCAAAATCGAAAGCCTTTAAGAAGAGCAGCTAAGAAACGTGTTGAGCTTCGAAGTCTTTCTCCATTTCTATGCATACAACGATAA 4143 0.3973 MRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELLCVVAQYGDVDSRASSYLKKELLRISDKEKSRREKLWKNGIIKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKSVKLRLLYRHSLAELYDLSFSMDKYTAEDKAECRSVRRQSSCLGALTKKVIYMYIFVKGGPITFAQLATEWLLQSNTILQNVFLTDAFVTALKKAEQFLWAGSEMDSVRDMVKNLIEAKKWAEGIRDCVTKIELWKCHQDSSVKKIHLEFVDELLRFNPVPCNEPHYHKLKEYAEEARLLSQEIGAALSICSEMSELELLYSRACGLPIYLKESKELEGKISSTKAWLDSVRKCISARDPAALEVDVLYKLKSEIADLQVQLPEIDVLQNLLSQTESCSARCRDMLQGPMDLKNVGLLLKEWDTFTVDVPELKLLRHYHSDAVSWVSHFHDALGRVHKQEDQHNVVDELKKIFEEGLSLTIKVDELPLVEIELKKANCREKALKAHDSKMPLEFIQQLLKEAAMLEIEGEKQFIYLSSVLGIAMPWEERAREILSHGASISDFEDMIRASENIFVILPSLNDVKEALSEANSWLRSSKPYLVSSTCASNSVWKVEDLQILVSQSKHLKISLEERGMLELVLNNCKKWEYEACSLIDDARCLFELDTTVHGISSSLMSKVEDLVARIQSTITSGVSLGFDFSDIPKLQASCSTLRWCRRAISFCNHSPSLEDVLEVADGLSHSFVSGALLKVLVDGVEWLRRALEGISAPRHSRKCKFTDVQDILNDYQTIKMTFAAVKCHLVEAIGKHKLWQEQVHQFFRLSSRERAWSSIVQLKELGDTVAFGCSELDLISSEVEKVENWKKRCMDNIGTLVQNENSLLHALEKIKQTLDRSLLIYGMLQDQNQKEQNRCICCFIDSEDQEFLTCTTCMDCYHLRCIGLTAKDTGLGDYKCRYCEIVKGESQFSDGSALLRFEKKRLELNVLIELLSDAEHFCLWIDERDILNQLVEKALACKSCLRETVNLASANVDEDISIISEKLTVAIKASKVAGVYDQHDNCDLELALAKNLWKIQVDRLLNGVQKPAIQQIQKHLKEGVAMEISPEDHYMRKLTNVNCLTLQWVEIAKQVAIDSGALGLDKVFELVAEGENLPVDVNEELKMLRARCMLYCICRKPFDPRRMIACYHCNEWYHYDCMKLPCTREVYICPACNPCTGLPTNHDRLTSGKFEEPKTPSPRHTNPRKKQKRDVPSLSCEMFGTRNQDSSNYRYSSGIECLRWQNRKPLRRAAKKRVELRSLSPFLCIQR. 1381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03021 1380 Pfam JmjC domain, hydroxylase 9 69 IPR003347 -
Seca9g03021 1380 SUPERFAMILY FYVE/PHD zinc finger 980 1033 IPR011011 -
Seca9g03021 1380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 971 1038 IPR013083 -
Seca9g03021 1380 SUPERFAMILY FYVE/PHD zinc finger 1239 1291 IPR011011 -
Seca9g03021 1380 SMART PHD_3 1244 1286 IPR001965 -
Seca9g03021 1380 SMART PHD_3 987 1033 IPR001965 -
Seca9g03021 1380 MobiDBLite consensus disorder prediction 1299 1325 - -
Seca9g03021 1380 Gene3D Cupin 1 112 - -
Seca9g03021 1380 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 579 - -
Seca9g03021 1380 SUPERFAMILY Clavaminate synthase-like 2 101 - -
Seca9g03021 1380 ProSitePatterns Zinc finger PHD-type signature. 1245 1285 IPR019786 -
Seca9g03021 1380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1229 1287 IPR013083 -
Seca9g03021 1380 ProSiteProfiles JmjC domain profile. 1 86 IPR003347 -
Seca9g03021 1380 Pfam C5HC2 zinc finger 163 214 IPR004198 -
Seca9g03021 1380 Pfam PLU-1-like protein 488 725 IPR013637 -
Seca9g03021 1380 Pfam PLU-1-like protein 690 942 IPR013637 -
Seca9g03021 1380 Pfam PLU-1-like protein 436 524 IPR013637 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03021 Seca-Chr9 43720648 43741360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03021 1 212 JUMONJI Transcription Factor Family AT1G08620 40.948 2.99e-40 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca9g03021 PLU-1 5.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03021 K11446 - gmx:100789512 2334.3