Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03012 ATGAGAGATCTGTTACAATTGCAACTCTCACACCTCTCCTTCAATATCACTCCATATTGTCTTTATCATTTCCTTTCCCAAACAATGGCTGGTCCTTTCGATATGATAAGCAATATTTTTCCTGGAAGAGACACTTGGAGGCTCAAGGTTCGCATTGGCCACTTATGGAATATGACTCCAATTGATGACCCTGTCAAACCTTTTTCTGTGCAAATGATCCTCGTGGATGCAGAGGGTGGTAGAATCCAGGCTGGCATCAAAAAGCATTTGATGAGGAAATTTGCAAATTTATTGGTTGAAGGTGCTGTGTACAAGATGGCTTATTTCGAAGTAGTTAGAAACCTTGGTTCATATCGAGCCACAGAGCATGAGTTTCGTCTATTCTTTGATTCGAGAACCAGGGTTGTGCCAACCGAGAGTGAACTCATTCCAAGGTTTGGCTTATCTTTGAAGAACACACAAGATGTGGTGGACACGAAGGGCAAATCAGATTACTTGATGGATTTTATGGGGGTGTTGTTGGCTGTCTCAAATGAGAAGCGTATAATGAAGGAAGGCAAGCTAACGAGGGTTATTGTTCTTGAACTTGCTGATGAGAAGGGAAGGATAAGATGTTCTCTTTTTGGTGATTTTGTTGATATGGTCACAAACTTCCTATCCGAGGGGAAGAATGAGCTTCCCATAATCATAATACAGCTTGCAAGGGTCTCATCTTACAAGGGTTCAATTGTTTTACAAAATGTGATGAATGCCACAAAACTTTTCTGGAACCCACAAATACCTGAGGCTGTTGATTTTAAAAATGGAATCTCTTCGAATGACATTGATATCGATGTATCTGTTGGTTTAATTGAGGATAACTCCCGAGTTATGTCACTGAAAGAGGAATTTCTTGATGCATACCCGAGGAAAACTATTAGTCAGCTACAATATATATTGGAGGAGGGCATGTACATTGTTAGTGGAACTGTTGAAAGAGTTTCTGAGGAAGGGCTTTGGTGGTATATGGGCTGTAAGTGTCAAAGGTCCGTCATTCAGGATGCAGGTGGTTTCTACTGTTCCTGGTGCGAGACAATTGTCTACGAAGTGACTCCAAGGTACAAGCTGCTTTTAGAAGTTAATGACGGGCAGGAGAAAGCCAATTTCATGATCTTTGACACTGATGTCTACAGTGTACTTCAGATCAGCTGCAAGGACCTTATGTCTGGAATGAAGGTTTTCTTATTAATCTTATTTTTCTTCCTTAACCATAAAGCACGTCGTCCAATAGTGTTAACTTCATAA 1284 0.4065 MRDLLQLQLSHLSFNITPYCLYHFLSQTMAGPFDMISNIFPGRDTWRLKVRIGHLWNMTPIDDPVKPFSVQMILVDAEGGRIQAGIKKHLMRKFANLLVEGAVYKMAYFEVVRNLGSYRATEHEFRLFFDSRTRVVPTESELIPRFGLSLKNTQDVVDTKGKSDYLMDFMGVLLAVSNEKRIMKEGKLTRVIVLELADEKGRIRCSLFGDFVDMVTNFLSEGKNELPIIIIQLARVSSYKGSIVLQNVMNATKLFWNPQIPEAVDFKNGISSNDIDIDVSVGLIEDNSRVMSLKEEFLDAYPRKTISQLQYILEEGMYIVSGTVERVSEEGLWWYMGCKCQRSVIQDAGGFYCSWCETIVYEVTPRYKLLLEVNDGQEKANFMIFDTDVYSVLQISCKDLMSGMKVFLLILFFFLNHKARRPIVLTS. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03012 427 Gene3D - 143 278 IPR012340 -
Seca9g03012 427 CDD RPA1_DBD_A_like 47 135 - -
Seca9g03012 427 SUPERFAMILY Nucleic acid-binding proteins 301 403 IPR012340 -
Seca9g03012 427 CDD RPA1_DBD_B_like 168 267 - -
Seca9g03012 427 Gene3D - 32 137 IPR012340 -
Seca9g03012 427 Gene3D - 294 407 IPR012340 -
Seca9g03012 427 Pfam Replication factor-A C terminal domain 318 402 IPR013955 -
Seca9g03012 427 SUPERFAMILY Nucleic acid-binding proteins 154 274 IPR012340 -
Seca9g03012 427 PANTHER OS03G0429900 PROTEIN 23 390 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca9g03012 427 Pfam Domain of unknown function DUF223 72 139 IPR003871 -
Seca9g03012 427 SUPERFAMILY Nucleic acid-binding proteins 32 139 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03012 Seca-Chr9 43657957 43661762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03012 36 400 Core DNA Replication Machinery Family AT5G45400 22.704 7.30e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03012 - - lja:Lj6g3v0884310.1 372.859