Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03008 ATGAAGACCCATATAAAGTCAACCGATTGGAATACGATGGAATCCGATCCTTGTAACTGGTTTGGCGTCTCATGCACTGTGGCTCGAGATCATGTCATCAAGCTAAACATTTCAGGTTCTTCATTAAAGGGGTTTCTTGCACCAGAGTTAGGGCAAATCACTTATTTGCAAGAACTAATTTTGCACGGAAACAATCTCATTGGAATAATACCTAAAGAGTTATGCACGTTGAAATCTCTCCAGGTGTTGGATTTGGGAATGAATCGGCTATCAGGACCAATTCCTCCAGAGATTGGAAATTTAACCTTACTAGTGAAGATAAACCTGCAGTCCAACGGGTTGACTGGTAGGCTACCTCTGGAGTTAGGAAATTTGAGATACCTTCAAGAACTTCGGCTGGATAGGAATAAGCTTCAGGGACCTGTTCCTGCTGGTGACAGTACTAATTTTGTTTCAAATATACATGGAATGTATGCATCAAAGGAGAATGTAACTGGTTTCTGCCGTTCGTCTCAGTTAAAAGTAGCAGACTTTTCATATAATTTTTTTGTTGGTAGCATACCTAAATGCTTGGAGTATCTTCCGAGGTTAAGCTTTCAAAGGAACTGCCTCCAGAGCAAAGACTTAAACCAGCGGCCTTCCATACAATGTGTGAACTATTATTTCATAGCTGGTGCTTCACCTGCCAAGAGTCAGCCAGTGGTGAACCCGAACCACCAACCTGCTGAATATTTGTCCAAGCATCACGGAGCATCAAAACCTGCTTGGCTTTTGGCTCTAGAAATAGTAACGGGAACTATGGTCGGTTCTCTCTTTCTGGTTGCTGTTCTCGCCGCTTTTCAGAGATGTAACAATAAATCATCTATCATTATTCCTTGGAAAAAATCTGCGAGCCAGAAAGATCATAACACAGTATATATAGACCCTGAGATGTTAAAGGATGTGAGAAGGTATAGTAGACAAGAGCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGACAGTGTGGTCTACAAGGGAACCATGAAAGGTGGGCCTGAAATTGCCGTAATTTCCCTCTGCATCAAGGAGGAGCATTGGACAGGATATCTTGAACTCTATTTTCAGAGAGAGGTGGCAGAATTGGCAAGGTTAAATCATGAGAATACTGGAAAACTACTGGGATATTGCAGAGAGAGCACTCCATTTACAAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACACTTCATGAGAACCTACATTATGAAGAAGGATGCCAGTTCTCTTGGACAAGGCGTATGAATATTGCTATAGGCATTGCACGTGGACTCAAGTATTTGCACACAGAAGTTGAGCCTCCATTCACTATCTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAGAATTCTGGTTCTATTAGCAGTCAAGGTGCTGTTTGTGTTCTTCCAAACTCCCTGGAGGCGCGCCATCTTGATACCCAAGGAAACATATATGCTTTTGGGGTACTTCTGCTAGAGATAATCAGCGGGAGACCTCCATACTGTAAGGACAAAGGGTACTTGGTGGACTGGGCCAAGGACTATCTTGAAATGCCAGAAGTAATGTCACATTTGGTGGATCCCGAATTGAAACATTTTAGATATGATGACCTCAAAGTTATATGCGAGGTAATAACTCTTTGTATCAATCGTGATTCAACTACGCGTCCATCTATGCGAGAATTATGCAGCATGCTGGAGAGCAGAATTGACACATCAGTAAGCGTGGAGCTCAAGTCATCATCTTTGGCTTGGGCTGAACTTGCACTTTTATCATAA 1881 0.42 MKTHIKSTDWNTMESDPCNWFGVSCTVARDHVIKLNISGSSLKGFLAPELGQITYLQELILHGNNLIGIIPKELCTLKSLQVLDLGMNRLSGPIPPEIGNLTLLVKINLQSNGLTGRLPLELGNLRYLQELRLDRNKLQGPVPAGDSTNFVSNIHGMYASKENVTGFCRSSQLKVADFSYNFFVGSIPKCLEYLPRLSFQRNCLQSKDLNQRPSIQCVNYYFIAGASPAKSQPVVNPNHQPAEYLSKHHGASKPAWLLALEIVTGTMVGSLFLVAVLAAFQRCNNKSSIIIPWKKSASQKDHNTVYIDPEMLKDVRRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEEHWTGYLELYFQREVAELARLNHENTGKLLGYCRESTPFTRMLVFDYASNGTLHENLHYEEGCQFSWTRRMNIAIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSGSISSQGAVCVLPNSLEARHLDTQGNIYAFGVLLLEIISGRPPYCKDKGYLVDWAKDYLEMPEVMSHLVDPELKHFRYDDLKVICEVITLCINRDSTTRPSMRELCSMLESRIDTSVSVELKSSSLAWAELALLS. 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03008 626 PANTHER PROTEIN MALE DISCOVERER 2 7 626 - -
Seca9g03008 626 Pfam Leucine rich repeat N-terminal domain 7 25 IPR013210 -
Seca9g03008 626 Gene3D Phosphorylase Kinase; domain 1 300 409 - -
Seca9g03008 626 FunFam Nuclear pore complex protein NUP107 1 144 - -
Seca9g03008 626 FunFam Inactive receptor-like serine/threonine-protein kinase 302 409 - -
Seca9g03008 626 ProSiteProfiles Protein kinase domain profile. 328 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03008 626 Gene3D Ribonuclease Inhibitor 105 210 IPR032675 -
Seca9g03008 626 Gene3D Ribonuclease Inhibitor 2 104 IPR032675 -
Seca9g03008 626 Pfam Protein tyrosine and serine/threonine kinase 332 600 IPR001245 GO:0004672|GO:0006468
Seca9g03008 626 SUPERFAMILY Protein kinase-like (PK-like) 305 601 IPR011009 -
Seca9g03008 626 SUPERFAMILY L domain-like 7 198 - -
Seca9g03008 626 Gene3D Transferase(Phosphotransferase) domain 1 410 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03008 Seca-Chr9 43629464 43634477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03008 9 601 Receptor kinase-like Gene Family AT2G01210 27.713 3.28e-51 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Seca9g03008 PK_Tyr_Ser-Thr 1.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03008 - - gmx:100794714 1081.63