Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02994 ATGTTGGAGGTTAAAATGGAGCTCAAGGATTTCGAATTTGATTCACCTCATCGAGATATGCTCCATTTATGCCTTTCTTCGCCCAATTGCAATAATGACACCTCCCTCCTGGTCCTGGAATCAACCCCTGTTCCTGTTACAGGGATAATTAAAGCCCAAGCTAAATGCTCGACAAAGCGACGCTGGACAGAGGAAGAGGACAACATTTTGATTGAGTCAGTCAAGAAGCACGACGGAAGGAGCTGGAAAAAAATAGCTGAACACCTCCCTGGGCGAACCGACGTTCAATGCTTGCATCGCTGGCAAAAGGTTTTGAATCCTGATCTTGTTAAGGGATCATGGACAAAGGAGGAGGATGGTTGCCTAATTGAACTAGTAAGGAAGTATGGTTTCAAGAGATGGTCATTTATTGCAAAATTCTTACCAGGTCGTATTGGGAAGCAATGCCGAGAAAGGTGGCACAATCACCTTGATCCAGCTATAAAGAAGGATGCATGGACTGATGAGGAGGAATCAATACTTGCTTGTTATCACCAAATATACGGCAGTAGGTGGGCAGAAATTGCAAGGTTTCTTCCTGGAAGGACTGACAATGCTATAAAAAATCACTGGAACTGCTCAATGAAGAAGAAATTGTGTGCATCACCTTTTGGGTGTGACATAAATGTTGCCACTGCCGGTTCCTGCTCTTCTGGAATATTTAATGGAATGGATTCTCCCAAGCTGAATCACTGGTTGATGCACAGTGTTGATAACTTTCCCACAAAATTGTTTCTTCAAAATGCTTCTGGAGTGGAATTTTGCTCTGAAAAAAGCTGTTTTGAGCGGGGAACTCCTAGGGCCTCAAGTAAAGGTGAAAGCAGATCAGTTAATTTACCAAATGAGGCATGTGTCATTACATGTTGCAGGGACTATGCCAACACAATTAAACCTACAGGCTCGTTGTTGGATAATTCTCTGGATATGCTTGCTACAGATTTGGATTGTTTGCCTCTTGCAAGTACTGTTACTTATGAGGCATATAAATCTCCCAAACGACAAAAGGTTTCTTCCTCAGATGCAAAGTTTATTGTGGGTTATGTGAACTACTTAAAATCGGCTAATTGTGAGAAGAAAGGTCAAGTTGGAAAGGCAAGCAGCAAAATCAACAGTACGCCAGATAATGATGCAAACAACACAAATAACGTATATGATTGCGATCCTATTGAACGCTCCCCAGTGGAAGATTTGGTGTACCCAATAGAATATAGAGAATATCCAAGTCCAACAACACACATCGGATGCGCGGACAATAAAGGTTGTCATTATGTTCCTCCAGCATCTACACTGAGGAATTGCCTGAACAGCATCAGCCCAGAATCTGTACTAAGAAGCTTAGCAATGACCTATGAGAATGTTCCTTCTATTATTAGGAAAAGAACTTCCAGGAAAGCATGCAGTGCTGACTATTGTGACAGTGCCCAAACACCTTCGAGAATGATCATCTCTTCTCCTGAAGCAGAACCTTTAATTGGCTTGGATAATTTAAAACTGAACTAG 1539 0.4198 MLEVKMELKDFEFDSPHRDMLHLCLSSPNCNNDTSLLVLESTPVPVTGIIKAQAKCSTKRRWTEEEDNILIESVKKHDGRSWKKIAEHLPGRTDVQCLHRWQKVLNPDLVKGSWTKEEDGCLIELVRKYGFKRWSFIAKFLPGRIGKQCRERWHNHLDPAIKKDAWTDEEESILACYHQIYGSRWAEIARFLPGRTDNAIKNHWNCSMKKKLCASPFGCDINVATAGSCSSGIFNGMDSPKLNHWLMHSVDNFPTKLFLQNASGVEFCSEKSCFERGTPRASSKGESRSVNLPNEACVITCCRDYANTIKPTGSLLDNSLDMLATDLDCLPLASTVTYEAYKSPKRQKVSSSDAKFIVGYVNYLKSANCEKKGQVGKASSKINSTPDNDANNTNNVYDCDPIERSPVEDLVYPIEYREYPSPTTHIGCADNKGCHYVPPASTLRNCLNSISPESVLRSLAMTYENVPSIIRKRTSRKACSADYCDSAQTPSRMIISSPEAEPLIGLDNLKLN. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02994 512 FunFam Transcriptional activator Myb isoform A 58 110 - -
Seca9g02994 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
Seca9g02994 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Seca9g02994 512 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
Seca9g02994 512 CDD SANT 165 205 IPR001005 -
Seca9g02994 512 Gene3D - 165 212 - -
Seca9g02994 512 Gene3D - 58 110 - -
Seca9g02994 512 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
Seca9g02994 512 ProSiteProfiles Myb-like domain profile. 59 105 IPR001005 -
Seca9g02994 512 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Seca9g02994 512 PANTHER MYB PROTEIN-RELATED 59 130 - -
Seca9g02994 512 CDD SANT 61 105 IPR001005 -
Seca9g02994 512 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Seca9g02994 512 Pfam Myb-like DNA-binding domain 163 205 IPR001005 -
Seca9g02994 512 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Seca9g02994 512 CDD SANT 113 157 IPR001005 -
Seca9g02994 512 MobiDBLite consensus disorder prediction 377 398 - -
Seca9g02994 512 FunFam Transcriptional activator Myb isoform A 111 163 - -
Seca9g02994 512 Gene3D - 111 162 - -
Seca9g02994 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Seca9g02994 512 SMART sant 58 107 IPR001005 -
Seca9g02994 512 SMART sant 162 210 IPR001005 -
Seca9g02994 512 SMART sant 110 159 IPR001005 -
Seca9g02994 512 SUPERFAMILY Homeodomain-like 58 112 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02994 Seca-Chr9 43424487 43428480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02994 62 212 MYB Transcription Factor Family AT5G02320 70.861 2.30e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g02994 Myb_DNA-binding 5.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02994 - - aprc:113869477 613.609