Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02993 ATGGCGCCATTACCGGCGGAGCAGAGCGGTGAATCAGCGCTAACGGACTCGCAGAGATCCATTCCGACGCCGTTTTTGACGAAGACATACCAGCTCGTGGATGATCCCTTAGCAGATGACCTAATTTCGTGGAACGAAGATGGCACAAGCTTCATAGTTTGGCGACCCGCTGAATTCGCTCGAGATTTGCTTCCCAAGTACTTCAAGCACAACAACTTCTCTAGTTTCGTCCGTCAGCTTAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGATTGTTTCCGGCGAGGCGAGAGAGGCCTGCTTCGCGATATACAGCGCCGGAAAATATCGACGTCGGCGACGGCAGCAGGAGCGGGAGCAGGAGCCACGACGGCCAATACGGTAACGGTGGCGGTGGCGGCACAACCAGGCATAGCGCTGTCTCCAACAACTTCCGGCGATGAACAGGTACTATCCTCGAACTCATCTCCGATTGGTAATACAGTGCACCGCACCACAAGTTGCACCACTGCGCCCGAGCTCTTAGAAGAGAATGAAAGGCTTAGGAAAGAGAACATGCAACTGAGTCACGAGTTGAGTCAATTGAAGGGTCTGTGTAATAACATAGTCGCCTTGATGTCCAATTATGCTTCTGGTTTTAGCCGCCAACTAGAATCGTCGACTAGTGCTGCCACTGCCACTGCGAGGGCCGTGCCTGTGGTACCTGAAGGGAAAGCGTTGGAGCTTTTGCCTGCAAATGCGAAGCATGTTTCATTGGCTGAGGACGCTATGCATGTGAGTGACGCTGCCGGTGCCACCGCACCGTGCGAGACGGCGGAAGCAGAGGTTCCCAAGCTGTTTGGGGTTTCAATTGGGCTGAAACGATGTAGGACAGAGAGCGAGAAGAGAGAGGAACAGAATCAAACTCAAACGCAGACGCAAACACAATCCTCGCAGGAACCAGATCGAGGGTCAGATTTGAAATCTGAACCGCTTGATGGCGATGACTCGGATGATCAGGACCCTCGTTGGCTGGAGCTTGGAAAATCATAA 1053 0.529 MAPLPAEQSGESALTDSQRSIPTPFLTKTYQLVDDPLADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERGLLRDIQRRKISTSATAAGAGAGATTANTVTVAVAAQPGIALSPTTSGDEQVLSSNSSPIGNTVHRTTSCTTAPELLEENERLRKENMQLSHELSQLKGLCNNIVALMSNYASGFSRQLESSTSAATATARAVPVVPEGKALELLPANAKHVSLAEDAMHVSDAAGATAPCETAEAEVPKLFGVSIGLKRCRTESEKREEQNQTQTQTQTQSSQEPDRGSDLKSEPLDGDDSDDQDPRWLELGKS. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02993 350 FunFam Heat stress transcription factor B-4 17 115 - -
Seca9g02993 350 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g02993 350 MobiDBLite consensus disorder prediction 307 322 - -
Seca9g02993 350 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g02993 350 Gene3D - 17 115 IPR036388 -
Seca9g02993 350 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g02993 350 MobiDBLite consensus disorder prediction 150 171 - -
Seca9g02993 350 Coils Coil 178 205 - -
Seca9g02993 350 MobiDBLite consensus disorder prediction 298 350 - -
Seca9g02993 350 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Seca9g02993 350 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g02993 350 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g02993 350 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g02993 350 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 318 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02993 Seca-Chr9 43413721 43415692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02993 16 349 HSF AT4G11660 53.314 4.50e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca9g02993 HSF_DNA-bind 8.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02993 K09419 - gmx:100791020 478.018