Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02991 ATGGCGACGACGAGGTCCCCGAGCCGTTCCTCTGAAGACATCGTCGATTCGATACCGTTGCTAGCGAATTCTGGCGGCTCTTCCGAAGAAATCAACTCCGGGCGTCGATTCATTCAGAGACAGAGGCTTCTGCAAGCGGCGCGATTCCTCCGGCAGGCGAGTGGGCGGAGGATGATGCGTGAGCCATCGGTGGTGGTTCGAGAGGCTGCGGCGGAGCATTTGGAGGAGAGGCAGAGCGATTGGGCTTATTCGAAGCCTGTCGTCATTCTCGACATCGTTTGGAACTTCTCCTTCGTTGTTGTGGCGGCCGCCGTTTTGGTTCTGAGCCGAAGTGAAGCACCGGACATGCCTCTGAGGTTGTGGATTGCAGGATATTCTTTGCAATGCATAATTCACATGGCCTGTGTTTGCGTCGAGTACAGGAGACGGAGGCGGAACCAACGCGCCAACGCAGTCTCAGGGCAAGACAGGGTTGGCACCAGCAGTGGGAATTTGAGTTCCGTTTTAAGGGAGGGTTCTGGTTCTGGGCACTACGTGTCATTGGCGCAATTTGATTTATCCATTTTCATGTTTGTCTTTTTTATCAGCAGTGTTGCTAAGCATTTGGAATCAGCCAATACTATGTTTTCATTTATTTGGTGGATTATTGGGTTCTACTGGGTATCAGCCGGTGGTCAAGCTTTAGCCCAAAATTCCCCTCAGCTTTACTGGCTATGTATAATCTTCCTGGGTTTTGATGTTTTCTTTGTTGTTTTCTGTGTTGCACTAGCGTGTATCATTGGTATCGCCGTTTGCTGTTGTCTTCCGTGTATCATTGCACTTCTTTATGCAGTTGCAGATCAGGAAGGGGCATCAAAGGAAGACATTGAGCAATTGTCAAAATTCAAATTCCGAAGAGTTGAAAGTAATGAGAAACCTACTGGTAATGCACAAGGACCTGTTGGAGGAATAATGACTGAATGCCAGGCGGATTCACCTATTGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGACGATGGGGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTACATCAATGCTACATGCCCCCTCTGCAAGTATAACATCTTGAAAAGCAGCAACCTCGGTCAAGAGGAAGTGTAG 1182 0.4848 MATTRSPSRSSEDIVDSIPLLANSGGSSEEINSGRRFIQRQRLLQAARFLRQASGRRMMREPSVVVREAAAEHLEERQSDWAYSKPVVILDIVWNFSFVVVAAAVLVLSRSEAPDMPLRLWIAGYSLQCIIHMACVCVEYRRRRRNQRANAVSGQDRVGTSSGNLSSVLREGSGSGHYVSLAQFDLSIFMFVFFISSVAKHLESANTMFSFIWWIIGFYWVSAGGQALAQNSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRVESNEKPTGNAQGPVGGIMTECQADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLGQEEV. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02991 393 ProSiteProfiles Zinc finger RING-type profile. 338 379 IPR001841 -
Seca9g02991 393 PANTHER TARGET OF ERK KINASE MPK-1 54 384 - -
Seca9g02991 393 FunFam E3 ubiquitin-protein ligase At1g12760 324 389 - -
Seca9g02991 393 CDD RING-H2_RNF6-like 337 379 - -
Seca9g02991 393 Pfam Ring finger domain 337 379 IPR001841 -
Seca9g02991 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 391 IPR013083 -
Seca9g02991 393 SUPERFAMILY RING/U-box 328 385 - -
Seca9g02991 393 SMART ring_2 338 378 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02991 Seca-Chr9 43392320 43398109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02991 1 386 C3H Transcription Factor Family AT1G68070 46.272 6.00e-115 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02991 - - gmx:100790497 606.675