Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02990 ATGGGGAAGGCATCCAAATGGTTTCGCGGGCTTCTCGGTCTGAAAAGACAAGACTCGCCCCCTCCCTCAGCTCCAAAACCACCCAAAGAGAAACGCCGATGGAGCTTCGTCAAGTCTTACAGAGAAAAGGACACTGTTGAACGCGATGAACACGCCCTCGCTGTCGCAGCCGCCACCGCTGCCATGGCGGAGGCAGCCGTCGCTGCTGCTCATGCCGCAGCCGCCGTCGCCAGACTCACTAGCGGTAGCAGGACCGCTGCCGGAGACATTGTTCGCGAAGAATGGGCAGCCATTAAGATTCAAGCCGCGTTTCGAGGCTATTTGGCAAGAAAAGCGCTGCGAGCGTTAAAAGGATTGGTGAAGCTACAGGCATTGGTGAGAGGTCACATTCAGAGGAAGCGCACAACAGATTGGCTGCAAAAAATGCAAACACTCTTACGTGCACAGGCCCGAGCCCGTGCTGGTCGGGCCCAAACTCAGCAGGCCTCCTATTGGACTGCAAAGCCATCTACTAGCCACCTTCATGTTCCAGCAACACCAGACAAATTTGAAAGCCCAATTAGATCTGAGAGCTTGAAATATGATCAGTCATCATCAGTACTCAAGAGAAACAGTTCCAAACCCCGTGTCCAGATCAGTGCAAATCAAGAGAACTTTGGGAATAGATCAGATAGTTATGTTGATGAGCAATCGTGGAATCAAAGAAGATCATGGATTAGCATGGATGATGAAAGAAGTGTAAGGATTCTTGAAATTGATTCTGGAAAACCACACAACACATCTAAACGTAGAAACCTCTTTTATTCCTCTAGTCAAGGTTTGGTTTCGGATCATTACAGTCAGAGTTTAACTGCCACCACAAAGGACTCAACATCTTATCAATCTGGTCAAAGTCCATCATCTTGTGAAGTTCAGTCTTACAGCCCTCTAAAAATCAACAGGGTTGAGGAGGAGAACTCATTGTGCGGTGCCGACAATAGTCCTCAAATTTTATCTGCCTCTTCTAAAGATGGTGGCTCTAAAACGAGTCCGTTTACTCCTACCAGGAGTGATGGCTCAAGAAGCTATCTAAGTGGTTATTCTGACTATCCAAGTTACATGGCTTACACGGAGTCTTCAAAAGCAAAGGTAAGATCTCTCAGTGCTCCAAAACAGAGGCCCCAGTATGAGAGGTCTAGTTCATCGTCCAACAGGTACTCGCTTCATCGATTTGGAGAATCAAAATTGGCCACACAAAGGGTATCTGCATTGCACACAAGCTTCGCTAGCAAAGCCTATCCTGGTTCTGGTCGTTTGGACAACCTTGGTTTGCCTGTGGAATATAGATACTGA 1332 0.4775 MGKASKWFRGLLGLKRQDSPPPSAPKPPKEKRRWSFVKSYREKDTVERDEHALAVAAATAAMAEAAVAAAHAAAAVARLTSGSRTAAGDIVREEWAAIKIQAAFRGYLARKALRALKGLVKLQALVRGHIQRKRTTDWLQKMQTLLRAQARARAGRAQTQQASYWTAKPSTSHLHVPATPDKFESPIRSESLKYDQSSSVLKRNSSKPRVQISANQENFGNRSDSYVDEQSWNQRRSWISMDDERSVRILEIDSGKPHNTSKRRNLFYSSSQGLVSDHYSQSLTATTKDSTSYQSGQSPSSCEVQSYSPLKINRVEEENSLCGADNSPQILSASSKDGGSKTSPFTPTRSDGSRSYLSGYSDYPSYMAYTESSKAKVRSLSAPKQRPQYERSSSSSNRYSLHRFGESKLATQRVSALHTSFASKAYPGSGRLDNLGLPVEYRY. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02990 443 MobiDBLite consensus disorder prediction 190 226 - -
Seca9g02990 443 MobiDBLite consensus disorder prediction 321 356 - -
Seca9g02990 443 Pfam IQ calmodulin-binding motif 120 134 IPR000048 GO:0005515
Seca9g02990 443 Pfam IQ calmodulin-binding motif 95 114 IPR000048 GO:0005515
Seca9g02990 443 Pfam Protein of unknown function (DUF4005) 327 402 IPR025064 -
Seca9g02990 443 Gene3D - 94 135 - -
Seca9g02990 443 SMART iq_5 92 114 IPR000048 GO:0005515
Seca9g02990 443 SMART iq_5 115 136 IPR000048 GO:0005515
Seca9g02990 443 MobiDBLite consensus disorder prediction 286 305 - -
Seca9g02990 443 MobiDBLite consensus disorder prediction 378 398 - -
Seca9g02990 443 MobiDBLite consensus disorder prediction 159 226 - -
Seca9g02990 443 PANTHER IQ-DOMAIN 5-RELATED 1 402 - -
Seca9g02990 443 ProSiteProfiles IQ motif profile. 93 121 IPR000048 GO:0005515
Seca9g02990 443 MobiDBLite consensus disorder prediction 1 36 - -
Seca9g02990 443 MobiDBLite consensus disorder prediction 159 173 - -
Seca9g02990 443 ProSiteProfiles IQ motif profile. 117 144 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02990 Seca-Chr9 43384551 43388256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02990 1 443 IQD Protein Family AT4G23060 40.377 2.05e-62 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02990 - - qsu:111999477 456.447