Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02989 ATGGCAATGGTAACAAAAACTCCCCTTTATGAGGATGGTGAGGTTGTTGGTGTTATCACTGTTTCAAGTGATGCAGCTGTATTTAACTCTATAGATTCAGGAAATCAAAGAACTTACCAATCTGGTGCCAATGGTCAACCTGGAGTACGGAGGTTAAACTTAAAGAGGATTCAGTGGCCTCCACGGCCCTTGATTGCACCAATGCCACAGATTACTTCATCTGTTTCCAATCTGGCATCAAAGTTTCTCCCGCTCCGGCATACAGATGACACAGTTTCCAGGAATACTTCAACATGTCAAGATGATGACAAACTAGAGAAGCGTGGCATATGTGAAATGAAACCTCATTCTAGACATCACCATAAGGAAAACACAACTGGCAGGGAGGCCTCTCTGAAGGATGAGTCTACTCCTGAATTCGGCCAACCTTCTAAAATTGCAGCTAGAGTTCTTGCTAAGCTTCAAATTGGGGGAGGTGGAAAATGTGGGAAGGAAACTGGCAGAATTAAAAATAATTGCACAACTGATAATGACTCATCTGGAGGTTCAGTGGCATTAACTACACACCAGGATGTTGCTAATGGAGTGGATAAAGAAGGAAATCTCCATAAATGTGATTCTTTATTTGTTACAAAGAGAGCAGATGCTAAAGTTTGTGTGGATAGAACTTCTAGTGCTTTCAAAGTTAGTTCTTCTAAGCCTTTCTCAGGGGAGTGTTATGAGTGTTTTGGTTCTGCTGTTCCCCAAGACCCATTGCTAAGATTACACTGTCAATTTGATCCAAAGAAATTGGAGCCAGAAGCTACAAATATGGTGATAAAAGATGAAGTGCAAAAGCAGCAAGAAGGGTTGCAATTGCCAAGTTCGAGGGAGAGTATAGGCAGCCATGAGAGTTCATCAAGCAAGGGGGATAATGAGTCAAACTCCGTTGTACAGTGTGAAATCCATTGGGAAGACCTTCAATTAAGAGAAGAGATTGGACAGGGTTCTTATGCTGCCGTCTATCATGGTATTTGGAATGGATCGGATGTTGCCATCAAGGTTTACTTTGGGAATGGATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAGTATATTCACAGGAGAGGCTTGCCATTGTGACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAACTCTTCACAATGACAATCAGACATTAGACATCAGAAGGCGTCTAAGGATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCGCCAATCGTGCATAGAGACCTAAAGTCTTCTAACCTACTTGTTGATAAAAACTGGACTGTCAAGGTTGGAGACTTTGGCTTGTCAAGGTTGAAGGATGCAACTTTGTTGACTACCAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAGGTCCTTCGCAATGAACCTTCAAATGAAAAGTCTGATGTGTTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCCTGGAAAAATTTGAATTCCTTACAGGTTTCTCTCTCCCTCTCTGTGACGCACAATACTTGTCTGTGCTTTCTAGTCAACTGCACAGAGAGTTCAAGCTAA 1650 0.4206 MAMVTKTPLYEDGEVVGVITVSSDAAVFNSIDSGNQRTYQSGANGQPGVRRLNLKRIQWPPRPLIAPMPQITSSVSNLASKFLPLRHTDDTVSRNTSTCQDDDKLEKRGICEMKPHSRHHHKENTTGREASLKDESTPEFGQPSKIAARVLAKLQIGGGGKCGKETGRIKNNCTTDNDSSGGSVALTTHQDVANGVDKEGNLHKCDSLFVTKRADAKVCVDRTSSAFKVSSSKPFSGECYECFGSAVPQDPLLRLHCQFDPKKLEPEATNMVIKDEVQKQQEGLQLPSSRESIGSHESSSSKGDNESNSVVQCEIHWEDLQLREEIGQGSYAAVYHGIWNGSDVAIKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKTLHNDNQTLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLTTKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVSLSLSVTHNTCLCFLVNCTESSS. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02989 549 MobiDBLite consensus disorder prediction 114 140 - -
Seca9g02989 549 MobiDBLite consensus disorder prediction 114 135 - -
Seca9g02989 549 ProSiteProfiles Protein kinase domain profile. 320 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02989 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Seca9g02989 549 FunFam Serine/threonine-protein kinase isoform 1 311 398 - -
Seca9g02989 549 ProSitePatterns Protein kinases ATP-binding region signature. 326 347 IPR017441 GO:0005524
Seca9g02989 549 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 118 525 - -
Seca9g02989 549 CDD STKc_MAP3K-like 326 528 - -
Seca9g02989 549 Pfam Protein tyrosine and serine/threonine kinase 320 527 IPR001245 GO:0004672|GO:0006468
Seca9g02989 549 MobiDBLite consensus disorder prediction 281 308 - -
Seca9g02989 549 Gene3D Phosphorylase Kinase; domain 1 313 397 - -
Seca9g02989 549 SMART serkin_6 320 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02989 549 Gene3D Transferase(Phosphotransferase) domain 1 398 537 - -
Seca9g02989 549 MobiDBLite consensus disorder prediction 278 308 - -
Seca9g02989 549 SUPERFAMILY Protein kinase-like (PK-like) 301 530 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02989 Seca-Chr9 43370995 43378465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02989 1 526 MAP Kinase Kinase Kinase AT4G23050 46.140 4.09e-136 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Seca9g02989 PK_Tyr_Ser-Thr 1.1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02989 - - gmx:100813707 848.195