Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02982 ATGGCCTCCTCACCATCTTCCAAGAGGCACCCACTGTACCATGGAATCCGAAGCCGTGGAGGAAAATGGGTGTCGGAAATCAGGGAGCCACGTAAGGCATCCCGCATATGGCTCGGGACATTCCCAACACCGGAGATGGCGGCTGCCGCCTATGACGTGGCGGCGCTGGCATTGAAAGGTGAAAATGCGGCTCTGAATCTCAACCTCCCTGACTTAATTGGAAAGTATGAAATGCCTGTAACTAACTCTCCTGCTGACATACGCAGTGCTGCCACTGCTGCAGCCTCAATGTTGAAATTAGGTGAACCTGAAGTGAGTCACAATGCATCATCCATTAATAATGTAGATGTAGGTAACTGCAGTGATAATAGTACTATAACTTCATCTTCATGGTTTGAAAGTGATTTCATAGACGAGGAAGCGATATTTGGCATGCCAAGTTTGCTGGTGGACATGGCTACGGGAATGCTTCTCTCACCTCCCAGAATGAGCCCACCACCGTCTGACAACTTGCCCGACAGGCAAGTTGGAGAAACTTTGTGGAGTTATTTTTGA 555 0.4883 MASSPSSKRHPLYHGIRSRGGKWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGENAALNLNLPDLIGKYEMPVTNSPADIRSAATAAASMLKLGEPEVSHNASSINNVDVGNCSDNSTITSSSWFESDFIDEEAIFGMPSLLVDMATGMLLSPPRMSPPPSDNLPDRQVGETLWSYF. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02982 184 CDD AP2 11 66 IPR001471 GO:0003700|GO:0006355
Seca9g02982 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 153 - -
Seca9g02982 184 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Seca9g02982 184 Gene3D AP2/ERF domain 12 69 IPR036955 GO:0003700|GO:0006355
Seca9g02982 184 Pfam AP2 domain 13 60 IPR001471 GO:0003700|GO:0006355
Seca9g02982 184 SUPERFAMILY DNA-binding domain 12 68 IPR016177 GO:0003677
Seca9g02982 184 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02982 Seca-Chr9 43240708 43241262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02982 7 183 AP2-EREBP Transcription Factor Family AT5G52020 51.397 5.41e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g02982 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02982 - - gmx:100811020 229.95