Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02979 ATGAACATTTTCAGAACATCCTTTGACGAGCTGAACTATAGCTACGGAGAGGCATCTTCTTCGCCGGAAACAAGTTCCTTTAATAACCGTAGAAGTTGCGCTGCTCACTCTGATGAAGAAGTTATATTAGCATCAGCGATGCCAAAGAAGAGAGCAGGGCGGAGAGTATTCAAGGAGACGAGGCATCCAGTGTACCGAGGAGTGCGACGGAGGAACAAGAACAAGTGGGTTTGCGAGATGCGAGTCCCTAACAACAACAACAACAAAAGGATTTGGCTCGGAACATACCCAACCCCTGAAATGGCTGCCAGGGCACATGATGTTGCCGCGCTGGCACTTCGAGGAAAATCTGCTTGTCTCAATTTCGCAGACTCGGCGTGGCGGTTGACGTTGCCGGCGTCAACCGATGCGGAGGAGATAAGGAGAGCGGCGGTGGAGGCTGCTGAATTGTGTGCGGCGGAGGACAACCAGAAGCAGAGTGTGAAGGACATTACTGTTGATTATGAATTTTGCAGCGTTGAGGATCACGTGGTCATGGAAGATGCCAATGAGCCTATGCAACAACAGGGGATGTATGTGGAAGAAGCTCCGGCGGTGTCAGAATTTGAAAAATTGCTTTTGAGTATTGCTGATGAGCCTTTGTTGTCTCCTCCTCCTTGTGCAAGAAATGGTTGGGACTGGAATGACGTGGACATATTTGATGCTGAAGTGTCATTATGGAACTTTTCCATTTGA 735 0.4884 MNIFRTSFDELNYSYGEASSSPETSSFNNRRSCAAHSDEEVILASAMPKKRAGRRVFKETRHPVYRGVRRRNKNKWVCEMRVPNNNNNKRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLTLPASTDAEEIRRAAVEAAELCAAEDNQKQSVKDITVDYEFCSVEDHVVMEDANEPMQQQGMYVEEAPAVSEFEKLLLSIADEPLLSPPPCARNGWDWNDVDIFDAEVSLWNFSI. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02979 244 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Seca9g02979 244 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Seca9g02979 244 ProSiteProfiles AP2/ERF domain profile. 64 123 IPR001471 GO:0003700|GO:0006355
Seca9g02979 244 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 19 241 IPR045277 GO:0003700
Seca9g02979 244 SUPERFAMILY DNA-binding domain 64 125 IPR016177 GO:0003677
Seca9g02979 244 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Seca9g02979 244 Pfam AP2 domain 63 115 IPR001471 GO:0003700|GO:0006355
Seca9g02979 244 SMART rav1_2 64 129 IPR001471 GO:0003700|GO:0006355
Seca9g02979 244 Gene3D AP2/ERF domain 64 124 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02979 Seca-Chr9 43216650 43217384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02979 38 242 AP2-EREBP Transcription Factor Family AT1G63030 45.622 1.03e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca9g02979 AP2 1.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02979 - - gmx:100789097 270.781