Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02952 ATGAGAAGACACCGTCAAATTCATCTCTCTCATGCTCTGTTGTTCGCCATTCTTTGTTTACTTGTCACGGTCTCTGCAGCAACTGAGAAGGAGATTTTACTTCAATTCAAGGGTAACATCACGGATGATCCTCACAACAGCTTGAGTTCGTGGGTTTCAAGTGGAAACCCTTGTCAAGGTTACAATGGCGTTTCATGTAACTCGGAAGGATTTGTAGAAAGAATCGTCCTTTGGAACACTAGCTTGGGTGGGGTGTTGTCCCCGGCACTTTCGGGGTTGAAGAGGTTGAGGATATTGACATTGTTCGGAAATCGCTTCACGGGTAATATCCCAGATGGGTATGCTGATCTTCACTCGTTGTGGAAGATCAATTTGAGCTCCAATGCGTTATCTGGTTCCATCCCAGAGTTCATAGGTGATTTACCTAGCATTCGCTTTCTAGATTTATCAAAGAATGGCTTCACTGGGGAGATACCTTCGGCTTTGTTTAGGTACTGTTACAAAACCAAGTTTGTTTCTCTTTCTCATAACAATCTTGTTGGTCCAATTCCTGCCTCGTTGGTGAATTGTTCTAACCTTGAAGGGTTCGATTTTTCCTTCAACAACCTTACTGGGGTTGTCCCTTCGCGAATGTGTGATATTCCAAGGTTATCATATGTATCGCTTAGAAGCAATGCTTTGTCAGGAACCGTGCAACAGCTCATTTCAGCATGTCAAAGTCTGGTACATTTGGATTTTGGTAGTAATAGCTTCGCCGATTTGGCCCCTTTCAGCATCCTTGAAATGCAAAATCTTACTTATTTCAATATATCACATAATGGGTTTGAAGGACATATTCCTGAGATCACTGCCTGTAGTGAGAGATTAGAAATCTTTGATGCTTCAGGTAATCATTTGGATGGGGAGATTCCCTCCAGCATAACTAAATGCGGAAACCTAAAGCTCTTGGCTTTGGAGTTGAATAGGCTGAAAGGGACTATCCCAGTTGATATTCAGGAATTGAGAAGACTGGTAGTTATCAAATTGGGTAATAATTCGATAGGTGGAGTGATTCCCAAGGGTTTTGGCAACATTGAGCTGCTTGAATTGCTGGATTTGCACAATTTAAACCTCATTGGTGAAATTCCAGTTGATATAAGCAATTGCAAGTTTCTTCTTGAGCTGGATGTTTCTGGTAATAACTTGGAGGGTGAGATTCCTGAGACATTTTACAACATGACAAATCTGGAAGCTCTTGACCTGCATCATAACCAGCTTAAGGGAAGCATCCCACCAAGCCTAGGAAACCTATCAAGGATCCAATACCTAGATCTGTCACATAATGAAGTTTCTGGTTCAATTCCTCCTTCCCTTGGAAATTTAAAAAACTTGACACATTTTGATCTCTCATTCAACAATCTCTCTGGTGCCATTCCTAATATCGCAACCATTCAGAATTTTGGTGCATCTGCATTTTCCAATAATCCTTTTCTCTGTGGTGCCCCTTTGGACAATCCTTGCTCAGAAAACGGAACTAGCAGCTCACCTTCAGCTCCTGGGAAGACTAAAGTTCTCAGTGCCTCTGTAATTGTTGCAATTGTTGCTGCGGCTGTAATTCTGACTGGGGTTTGTTTGGTGACCATCATGAATATTAGGGCTCGACGTAGAAAAAAAGATGATGATCAGATTATGATTGTTGAGAGCACATCTCTTGGATCATCAGGATCAGGTGTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGACAAAGAATCTTTGATAGGTGGTGGATCCATTGGAACAGTCTACAGAACTGATTTTGAAGGTGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTTTGGGAAGGATCAGAAATCAGGAGGAATTTGAACAAGAAATTGGGCGACTAGGCAACCTTCAACACCCTAATTTAGTTGCTTTTCAAGGCTACTATTGGTCTACTTCAATGCAGCTGATTCTATCAGAGTTTGTCCCAAATGGGAATCTCTATGATAATCTACATGGGTTTGGCTATCCTGGAACTAGCACTAGCAGAGGTAATAGGGAGTTACATTGGTCTCAAAGGTTCCAAATTGCACTTGGAACTGCAAGAGCCCTTGCCTATCTCCACCATGACTGTCGACCTCCAATTCTTCATCTCAATATTAAATCCTCTAACATACTCTTAGGTGACAGATATGAAGCTAAGTTGTCTGATTATGGGTTAGGAAAGTTACTTCCCATTTTGGATAATTACGGTCTGACCAAGTTCCACAATGCAGTTGGATATGTTGCACCAGAGTTAGCTCAAAGCCTGAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTTGGGGTCATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTAGAAAGTCCAACCACAAATGAGGTGGTGGTTTTATGTGAATATGTAAGAGGTATGTTGGAGACTGGCTCAGCTTCAAATTGCTTTGACAGAAGTTTACAGGGCTCTGCAGAGAATGAATTAATTCAGGTTATGAGATTGGGGTTAATTTGTACTTCGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGTCCTTGAGTCCATTAGAAATGGATTGGAATCTCATTAA 2661 0.4179 MRRHRQIHLSHALLFAILCLLVTVSAATEKEILLQFKGNITDDPHNSLSSWVSSGNPCQGYNGVSCNSEGFVERIVLWNTSLGGVLSPALSGLKRLRILTLFGNRFTGNIPDGYADLHSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFTGEIPSALFRYCYKTKFVSLSHNNLVGPIPASLVNCSNLEGFDFSFNNLTGVVPSRMCDIPRLSYVSLRSNALSGTVQQLISACQSLVHLDFGSNSFADLAPFSILEMQNLTYFNISHNGFEGHIPEITACSERLEIFDASGNHLDGEIPSSITKCGNLKLLALELNRLKGTIPVDIQELRRLVVIKLGNNSIGGVIPKGFGNIELLELLDLHNLNLIGEIPVDISNCKFLLELDVSGNNLEGEIPETFYNMTNLEALDLHHNQLKGSIPPSLGNLSRIQYLDLSHNEVSGSIPPSLGNLKNLTHFDLSFNNLSGAIPNIATIQNFGASAFSNNPFLCGAPLDNPCSENGTSSSPSAPGKTKVLSASVIVAIVAAAVILTGVCLVTIMNIRARRRKKDDDQIMIVESTSLGSSGSGVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYRTDFEGGISIAVKKLETLGRIRNQEEFEQEIGRLGNLQHPNLVAFQGYYWSTSMQLILSEFVPNGNLYDNLHGFGYPGTSTSRGNRELHWSQRFQIALGTARALAYLHHDCRPPILHLNIKSSNILLGDRYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQSLRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVRGMLETGSASNCFDRSLQGSAENELIQVMRLGLICTSEDPLRRPSMAEVVQVLESIRNGLESH. 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02952 886 Gene3D Ribonuclease Inhibitor 176 508 IPR032675 -
Seca9g02952 886 ProSiteProfiles Protein kinase domain profile. 598 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02952 886 SUPERFAMILY L domain-like 164 492 - -
Seca9g02952 886 SUPERFAMILY Protein kinase-like (PK-like) 599 877 IPR011009 -
Seca9g02952 886 SUPERFAMILY L domain-like 70 208 - -
Seca9g02952 886 Pfam Protein kinase domain 600 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02952 886 Pfam Leucine rich repeat 387 442 IPR001611 GO:0005515
Seca9g02952 886 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Seca9g02952 886 FunFam Putative LRR receptor-like serine/threonine-protein kinase 575 674 - -
Seca9g02952 886 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 675 885 - -
Seca9g02952 886 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 165 503 - -
Seca9g02952 886 ProSiteProfiles Leucine-rich repeat profile. 408 431 IPR001611 GO:0005515
Seca9g02952 886 Gene3D Transferase(Phosphotransferase) domain 1 679 885 - -
Seca9g02952 886 SMART LRR_typ_2 141 165 IPR003591 -
Seca9g02952 886 SMART LRR_typ_2 406 430 IPR003591 -
Seca9g02952 886 SMART LRR_typ_2 454 478 IPR003591 -
Seca9g02952 886 SMART LRR_typ_2 334 357 IPR003591 -
Seca9g02952 886 Gene3D Phosphorylase Kinase; domain 1 598 678 - -
Seca9g02952 886 CDD STKc_IRAK 604 879 - -
Seca9g02952 886 Gene3D Ribonuclease Inhibitor 25 175 IPR032675 -
Seca9g02952 886 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 164 - -
Seca9g02952 886 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Seca9g02952 886 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 507 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02952 Seca-Chr9 42945523 42949147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02952 12 885 Receptor kinase-like Gene Family AT1G62950 65.242 0.0 1136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Seca9g02952 Pkinase 1.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02952 - - gmx:100805681 1512.66