Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02946 ATGGATCCAATAACAGCGCATGGGCATTCTCTTCCTCCTCCTTTCCACACAGCAAGAGACCTCCATCTGCACCACCAACATCAGTTCCACTCCTTACAACAACAACAACAGCAACAGCAAAACACAGAAGACGAACAAAGCGGAAGCAGCGGTGGCCTTAACCTCGCACACAAAAGAGAACGTGAAGAAAACAACAACAGTGGTGGTGAAGTGAAGCAAGAGGGAGGCGAAACTGAGATGACAAGAAGACCTCGAGGAAGACCCGCTGGATCCAAGAACAAACCCAAGCCACCTATTATCATCACTCGTGACAGCGCAAATGCCCTAAAAACCCACGTCATGGAGGTCGCTGACGGTTGTGACATCGTAGACAGTGTCTCCAACTTCGCCAGGCGTCGTCAGAGAGGGGTTTGCATCATGAGTGGTACTGGAACCGTCACTAATGTAACGCTCAGGCAACCCGCTTCTTCTGGCGCTGTTGTCACTCTTCATGGAAGGTTCGAGATCCTCTCACTGGCTGGATCCTTCTTGCCACCGCCAGCACCACCGGCTGCTTCCGGTTTGACCATATATTTAGCGGGAGGGCAAGGACAGGTTGTAGGAGGAAGTGTTGTGGGGTCACTCATTGCTTCGGGGCCAGTGGTTATCATGTCAGCTTCATTTAGCAACGCTGCTTATGAGAGACTTCCTTTGGAAGAAGAAGACCCTTCGATGCCACTGCAAGGAGGTTCAATTGGGTCACCGGGTGGTGGTGGAGTTGGGCAGCAACAACAGCAGCAGCAGCAGCAACAACTTTTAGGGGATGCGACGGCTCCACTGTTTCATGGTTTGCCTCCGAATCTTCTCAATTCTGTTCAGATGCCGTCCGAGAATTTCTGGCCAAGTGGTCGCTCTCCTTACTGA 903 0.5172 MDPITAHGHSLPPPFHTARDLHLHHQHQFHSLQQQQQQQQNTEDEQSGSSGGLNLAHKREREENNNSGGEVKQEGGETEMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVDSVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGSLIASGPVVIMSASFSNAAYERLPLEEEDPSMPLQGGSIGSPGGGGVGQQQQQQQQQQLLGDATAPLFHGLPPNLLNSVQMPSENFWPSGRSPY. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02946 300 PIRSF ESCAROLA 17 299 IPR014476 GO:0003680
Seca9g02946 300 FunFam AT-hook motif nuclear-localized protein 109 236 - -
Seca9g02946 300 MobiDBLite consensus disorder prediction 234 300 - -
Seca9g02946 300 CDD DUF296 110 177 IPR005175 -
Seca9g02946 300 Gene3D - 109 237 - -
Seca9g02946 300 MobiDBLite consensus disorder prediction 25 100 - -
Seca9g02946 300 MobiDBLite consensus disorder prediction 28 53 - -
Seca9g02946 300 ProSiteProfiles PPC domain profile profile. 106 243 IPR005175 -
Seca9g02946 300 MobiDBLite consensus disorder prediction 250 268 - -
Seca9g02946 300 MobiDBLite consensus disorder prediction 282 300 - -
Seca9g02946 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 110 223 IPR005175 -
Seca9g02946 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 294 IPR014476 GO:0003680
Seca9g02946 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 106 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02946 Seca-Chr9 42887006 42887908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02946 1 300 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 56.456 3.08e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02946 - - gmx:100781436 405.986