Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02939 ATGGAAGGTGTTAGCAGTGGTGGGGTTACGGTGGTGGGATCGGATGCTCCGTCGAATTACCATATAGCTCCGAGGACTGAAACCCCAGCTTCGGCTGCCGGATCCGTCACGGTGCCGGTGGCTCAGGGGAGTGTTCAACCACCGCAACCGGCGGCGACAACTGTGCCGGCGAAGAAGAAGAGAGGTCGCCCAAGAAAGTATGGACCAGATGGCTCGGTGACCTTGGCACTATCTCCTAAGCCCATATCTTCAGCTCCGCCGCCGGTGATCGATTTCTCGGCGGAGAAGCGCGGGAAAGTGCGGCCAGCTAGCTCCGTCAGCAAAGCCAAATTCCAGCTGGAGAATTTAGGCGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACACCCCATATCATCACTGTTAATTCTGGAGAGGATATTACTATGAAGATAATATCATTTTCTCAGCAAGGACCGCGAGCTATATGCATTCTTTCTGCAAATGGAGTCATATCAAGTGTCACCCTTCGTCAGCCTGATTCTTCTGGAGGCACGTTGACATATGAGGTGAAGCATTTGTGTGTCTGCCACTGCTATCTTTCAGAAGGGGAAATTTCATATTTCTTACTATTGTTTCTTCAGGGACGGTTTGAAATTCTATCTTTGTCTGGCTCATTCATGCCAAGTGAAAGTGGTGGAACACGAAGCAGATCTGGTGGCATGAGTGTTTCTTTAGCAAGTCCAGATGGACGTGTTGTAGGCGGAGGGGTAGCTGGTCTATTGGTGGCTGCAAGTCCTGTGCAGGTTGTGGTAGGCAGTTTTCTGGCAGGTGACCAACATGAGGAGAAGCAAAAAAATCATAAACATGAGGTGATATCAACAACAGTAACACCAACTGCAGCTGTTCCCGTGTCTATTGCTGATCCAATACCTAATCTCTCATCTTCGCCTTCCTTCCGGGGAGATAATTGGTCTGCAATGCCAGCAGTGGCGGAGACCAGGAATAACCCAACTGACATTAATGTGTCACTTCCCGGAGGTTAA 1026 0.4961 MEGVSSGGVTVVGSDAPSNYHIAPRTETPASAAGSVTVPVAQGSVQPPQPAATTVPAKKKRGRPRKYGPDGSVTLALSPKPISSAPPPVIDFSAEKRGKVRPASSVSKAKFQLENLGEWVACSVGANFTPHIITVNSGEDITMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEVKHLCVCHCYLSEGEISYFLLLFLQGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGDQHEEKQKNHKHEVISTTVTPTAAVPVSIADPIPNLSSSPSFRGDNWSAMPAVAETRNNPTDINVSLPGG. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02939 341 Gene3D - 130 289 - -
Seca9g02939 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 311 IPR039605 GO:0003680
Seca9g02939 341 ProSiteProfiles PPC domain profile profile. 125 289 IPR005175 -
Seca9g02939 341 MobiDBLite consensus disorder prediction 1 80 - -
Seca9g02939 341 MobiDBLite consensus disorder prediction 30 51 - -
Seca9g02939 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 268 IPR005175 -
Seca9g02939 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 280 - -
Seca9g02939 341 CDD DUF296 129 245 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02939 Seca-Chr9 42811991 42824267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02939 5 338 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.065 8.33e-119 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02939 - - gmx:100801730 431.409